Alternatives and similar repositories for branchwater:

Users that are interested in branchwater are comparing it to the libraries listed below

• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 9 years ago
• aweimann / traitar
  ☆22Updated 2 years ago
• sourmash-bio / wort
  A database for signatures of public genomic sources
  ☆18Updated last month
• imgag / plasmIDent
  ☆15Updated 9 months ago
• karel-brinda / MiniPhy
  Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]
  ☆22Updated last week
• emilhaegglund / schavott
  Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing
  ☆9Updated 7 years ago
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆27Updated 3 weeks ago
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆21Updated 2 months ago
• jfass / apc
  (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
  ☆11Updated 3 years ago
• tongzhouxu / mashpit
  Sketch-based surveillance platform
  ☆13Updated 3 months ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated last month
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 3 years ago
• phiweger / uv
  Finding prophage regions in bacterial genomes using brute force
  ☆22Updated 2 years ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆24Updated last year
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated last year
• KoslickiLab / YACHT
  A mathematically characterized hypothesis test for organism presence/absence in a metagenome
  ☆30Updated 3 weeks ago
• camillescott / shmlast
  blast, shmlast
  ☆22Updated 4 years ago
• prophyle / prophyle
  Accurate, resource-frugal and deterministic DNA sequence classifier.
  ☆33Updated last week
• alexcritschristoph / VRCA
  Identifying ViRal and Circular content in metAgenomes
  ☆11Updated 6 years ago
• luizirber / ukhs
  Universal K-mer Hitting Set library in Rust
  ☆10Updated 4 years ago
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆22Updated this week
• oxli-bio / oxli
  k-mers and the like
  ☆21Updated 2 weeks ago
• broadinstitute / SynerClust
  source code for SynerClust
  ☆9Updated 5 years ago
• Malfoy / NIQKI
  Next Index to Query Kmer Intersection
  ☆16Updated 2 years ago
• moritzbuck / mOTUlizer
  Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin
  ☆14Updated 6 months ago
• sourmash-bio / databases
  Build sourmash databases for genbank.
  ☆12Updated last year
• FredHutch / octapus
  Bacterial Operon Finder for Functional Organization
  ☆14Updated last year
• onecodex / sars-cov-2
  SARS-CoV-2 variant calling and consensus assembly pipeline
  ☆25Updated last year
• phiweger / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆15Updated 6 years ago
• lskatz / pdtk
  NCBI Pathogen Detection Portal toolkit
  ☆11Updated last year