Searching large collections of sequencing data with genome-scale queries
☆17Feb 5, 2026Updated last month
Alternatives and similar repositories for branchwater
Users that are interested in branchwater are comparing it to the libraries listed below
Sorting:
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 2 months ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 2 years ago
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆14Jan 8, 2024Updated 2 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Mar 2, 2026Updated last week
- Just another minhash implementation.☆12Feb 25, 2026Updated last week
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Build sourmash databases for genbank.☆11May 4, 2023Updated 2 years ago
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆10Nov 10, 2025Updated 3 months ago
- ☆10Apr 20, 2018Updated 7 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 5 years ago
- A Python library for fast, thread-safe computations on phylogenetic trees☆29Feb 19, 2026Updated 2 weeks ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 6 months ago
- Protobuff and gRPC specifications for the MinKNOW LIMS Interface☆13Apr 20, 2021Updated 4 years ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Jun 14, 2022Updated 3 years ago
- A SIMD-accelerated library to compute random minimizers☆39Mar 1, 2026Updated last week
- ☆14Jan 20, 2016Updated 10 years ago
- kClust is a fast and sensitive clustering method for the clustering of protein sequences. It is able to cluster large protein databases d…☆18Feb 12, 2019Updated 7 years ago
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 4 years ago
- Tool to look for contaminants, with a kmer database.☆15Jun 6, 2014Updated 11 years ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated last month
- ☆19Dec 6, 2022Updated 3 years ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- ☆16Jan 21, 2024Updated 2 years ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆17Jan 13, 2026Updated last month
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆51Updated this week
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆47Apr 1, 2025Updated 11 months ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Dec 3, 2025Updated 3 months ago
- Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.☆19Nov 30, 2017Updated 8 years ago
- Pipeline to design taxon-specific primes in defined bacterial communities.☆26Jan 28, 2025Updated last year
- Confirming specific taxonomic groups within your samples.☆19Dec 21, 2020Updated 5 years ago
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 3 months ago
- Get assembly statistics from FASTA and FASTQ files☆124May 9, 2023Updated 2 years ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆22May 8, 2024Updated last year
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 5 months ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆124Aug 24, 2023Updated 2 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆62Updated this week