Searching large collections of sequencing data with genome-scale queries
☆17Feb 5, 2026Updated last month
Alternatives and similar repositories for branchwater
Users that are interested in branchwater are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 2 months ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 2 years ago
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆14Jan 8, 2024Updated 2 years ago
- Build sourmash databases for genbank.☆11May 4, 2023Updated 2 years ago
- Protobuff and gRPC specifications for the MinKNOW LIMS Interface☆13Apr 20, 2021Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Mar 16, 2026Updated last week
- Just another minhash implementation.☆12Mar 12, 2026Updated 2 weeks ago
- ☆16Jan 21, 2024Updated 2 years ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 7 months ago
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆10Nov 10, 2025Updated 4 months ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆17Jan 13, 2026Updated 2 months ago
- kClust is a fast and sensitive clustering method for the clustering of protein sequences. It is able to cluster large protein databases d…☆18Feb 12, 2019Updated 7 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Confirming specific taxonomic groups within your samples.☆19Dec 21, 2020Updated 5 years ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Jun 14, 2022Updated 3 years ago
- A SIMD-accelerated library to compute random minimizers☆39Mar 1, 2026Updated 3 weeks ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 2 months ago
- large-memory key-value pair store for Python☆50May 26, 2013Updated 12 years ago
- ☆19Dec 6, 2022Updated 3 years ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆47Apr 1, 2025Updated 11 months ago
- A Python library for fast, thread-safe computations on phylogenetic trees☆29Feb 19, 2026Updated last month
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆22May 8, 2024Updated last year
- ☆10Apr 20, 2018Updated 7 years ago
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 4 years ago
- Five pillars of computational reproducibility☆11Feb 6, 2024Updated 2 years ago
- ☆14Jan 20, 2016Updated 10 years ago
- ☆110Mar 10, 2026Updated 2 weeks ago
- Find Unique genomic Regions☆32Mar 18, 2026Updated last week
- Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.☆19Nov 30, 2017Updated 8 years ago
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆53Jul 24, 2025Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Feb 6, 2023Updated 3 years ago
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆12Dec 14, 2025Updated 3 months ago
- ☆23Aug 28, 2020Updated 5 years ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54Updated this week
- ☆15Jan 16, 2018Updated 8 years ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 4 months ago