Build sourmash databases for genbank.
☆11May 4, 2023Updated 2 years ago
Alternatives and similar repositories for databases
Users that are interested in databases are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 2 months ago
- kProcessor: kmers processing framework.☆10Oct 1, 2023Updated 2 years ago
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆21Sep 21, 2018Updated 7 years ago
- ☆19Dec 6, 2022Updated 3 years ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 2 months ago
- Just another minhash implementation.☆12Mar 12, 2026Updated last week
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Mar 16, 2026Updated last week
- Searching large collections of sequencing data with genome-scale queries☆17Feb 5, 2026Updated last month
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Oct 4, 2023Updated 2 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- AWS lambda S3 + rust-htslib: A serverless bioinformatics example☆14Jun 7, 2022Updated 3 years ago
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆19Oct 26, 2025Updated 4 months ago
- ☆16Jan 21, 2024Updated 2 years ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- taxonomic classes for Python☆11Aug 30, 2021Updated 4 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- long-read depth breaking☆11Apr 19, 2018Updated 7 years ago
- k-mers and the like☆22Mar 2, 2026Updated 3 weeks ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆53Mar 15, 2026Updated last week
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆118Jan 29, 2026Updated last month
- CAMITAX: Taxon labels for microbial genomes☆31Dec 14, 2023Updated 2 years ago
- The Dockerfiles for breeDBase☆12Mar 14, 2026Updated last week
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Dec 11, 2020Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 7 months ago
- Flexible omics pipeline☆17Oct 16, 2025Updated 5 months ago
- Benchmarking pairwise aligners☆37Feb 8, 2025Updated last year
- A small library for the Admin Port interface for OpenTTD☆12Jul 2, 2024Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- A tool for simulating random mutations in any genome☆43Feb 7, 2024Updated 2 years ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- ☆17Sep 20, 2019Updated 6 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Feb 11, 2020Updated 6 years ago
- A tool for computing the coding potential of RNA transcript sequences using deep learning classification model☆57Oct 11, 2022Updated 3 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 3 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- ☆26Jun 26, 2025Updated 8 months ago