Build sourmash databases for genbank.
☆10May 4, 2023Updated 3 years ago
Alternatives and similar repositories for databases
Users that are interested in databases are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A database for signatures of public genomic sources☆18Updated this week
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆21Sep 21, 2018Updated 7 years ago
- Snakemake with pytest example☆11Jul 18, 2020Updated 6 years ago
- ☆19Dec 6, 2022Updated 3 years ago
- map Illumina metagenomes to genomes!☆39Jan 22, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Just another minhash implementation.☆12May 28, 2026Updated last month
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Updated this week
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Oct 4, 2023Updated 2 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- AWS lambda S3 + rust-htslib: A serverless bioinformatics example☆14Jun 7, 2022Updated 4 years ago
- ☆16Jan 21, 2024Updated 2 years ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- Searching large collections of sequencing data with genome-scale queries☆19Updated this week
- taxonomic classes for Python☆11Aug 30, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- long-read depth breaking☆12Apr 19, 2018Updated 8 years ago
- k-mers and the like☆23Updated this week
- The Dockerfiles for breeDBase☆13Jul 15, 2026Updated last week
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54Jun 22, 2026Updated last month
- A demo implementation of Succinct de Bruijn Graphs.☆25Jun 30, 2013Updated 13 years ago
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆120Jan 29, 2026Updated 5 months ago
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CAMITAX: Taxon labels for microbial genomes☆31Dec 14, 2023Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆44Dec 11, 2020Updated 5 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- A tool for simulating random mutations in any genome☆43Feb 7, 2024Updated 2 years ago
- Flexible omics pipeline☆17Oct 16, 2025Updated 9 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- Benchmarking pairwise aligners☆37Feb 8, 2025Updated last year
- Tools for generating and decoding error-correcting DNA barcodes☆15Feb 15, 2022Updated 4 years ago
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆19Oct 26, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 11 months ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 4 years ago
- ☆12Feb 14, 2023Updated 3 years ago
- ☆17Sep 20, 2019Updated 6 years ago
- ☆31Aug 9, 2013Updated 12 years ago
- A tool for computing the coding potential of RNA transcript sequences using deep learning classification model☆57Oct 11, 2022Updated 3 years ago