richardmleggett / acc2taxView external linksLinks
Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings
☆14Jan 8, 2024Updated 2 years ago
Alternatives and similar repositories for acc2tax
Users that are interested in acc2tax are comparing it to the libraries listed below
Sorting:
- Searching large collections of sequencing data with genome-scale queries☆16Feb 5, 2026Updated last week
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 2 years ago
- ☆13Jan 20, 2016Updated 10 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Nov 18, 2018Updated 7 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- ☆11Mar 11, 2025Updated 11 months ago
- ☆11Mar 10, 2024Updated last year
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Aug 19, 2017Updated 8 years ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 5 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆32Oct 25, 2017Updated 8 years ago
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated 2 weeks ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13May 3, 2019Updated 6 years ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆20Jan 31, 2026Updated 2 weeks ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Dec 20, 2022Updated 3 years ago
- A succinct colored dBG representation☆12Sep 11, 2018Updated 7 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Jan 20, 2026Updated 3 weeks ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆14Dec 18, 2021Updated 4 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 3 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- The BaitFisher-package is a software package for designing hybrid enrichment probes. For more information see:☆13Oct 20, 2021Updated 4 years ago
- BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows.☆16Jul 30, 2018Updated 7 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- Tool to look for contaminants, with a kmer database.☆15Jun 6, 2014Updated 11 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Mar 18, 2019Updated 6 years ago
- The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.☆18Feb 26, 2022Updated 3 years ago
- Lightweight python library for predicting the difficulty of alignments in phylogenetics☆21Dec 6, 2025Updated 2 months ago
- DistilProtBert implementation, a distilled version of ProtBert model.☆16Sep 21, 2022Updated 3 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- Dynamic Multivariate Data Analysis and Visualization Platform☆41Nov 8, 2015Updated 10 years ago
- Minimum plain text representation of kmer sets☆16Jan 30, 2025Updated last year
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆20Dec 3, 2025Updated 2 months ago
- ☆18Aug 28, 2023Updated 2 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 5 years ago
- Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data☆33Oct 25, 2013Updated 12 years ago
- NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.☆18Sep 7, 2022Updated 3 years ago
- Compressive Read-mapping Accelerator☆14Sep 7, 2016Updated 9 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47May 27, 2022Updated 3 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Nov 26, 2024Updated last year