☆19Dec 6, 2022Updated 3 years ago
Alternatives and similar repositories for metaseek
Users that are interested in metaseek are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Build sourmash databases for genbank.☆11May 4, 2023Updated 2 years ago
- (formerly eelpond) an automated RNA-Seq workflow system☆27Oct 14, 2020Updated 5 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Feb 25, 2023Updated 3 years ago
- Just another minhash implementation.☆12Mar 12, 2026Updated last month
- Searching large collections of sequencing data with genome-scale queries☆17Feb 5, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- RNA dependent RNA Polymerase Palmprint Analysis☆12Aug 1, 2024Updated last year
- Flexible omics pipeline☆17Oct 16, 2025Updated 6 months ago
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- Code to generate re-assemblies of the Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)☆23Apr 14, 2019Updated 7 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Jan 22, 2020Updated 6 years ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 3 months ago
- Working with the outputs of sourmash in R☆28Jan 15, 2026Updated 3 months ago
- AWS lambda S3 + rust-htslib: A serverless bioinformatics example☆14Jun 7, 2022Updated 3 years ago
- ☆16Jan 21, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆118Jan 29, 2026Updated 2 months ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Oct 4, 2023Updated 2 years ago
- MAG Circularization Method☆32Nov 4, 2025Updated 5 months ago
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- A Haskell implementation of distributed hash tables with two-phase commit.☆10Dec 9, 2016Updated 9 years ago
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 4 years ago
- Get, parse, and extract information from the SRA metadata files☆46Sep 20, 2022Updated 3 years ago
- [DEPRECATED] An R package to pre-process bulk EKG data and detect the physiological peaks☆12Aug 22, 2016Updated 9 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Apr 3, 2026Updated 2 weeks ago
- taxonomic classes for Python☆11Aug 30, 2021Updated 4 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- Materials and presentation for the 2022 ISB Microbiome course.☆27Jun 13, 2024Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes☆18Feb 3, 2026Updated 2 months ago
- Claude Code plugin that offloads large outputs to filesystem and retrieves when required.☆36Jan 23, 2026Updated 2 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Apr 9, 2026Updated last week
- Repository for the T2D/obesity experiments run in the Metapheno paper☆15Feb 6, 2019Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Site that contains musings and code for compositional analysis of high throughput sequencing experiments☆17Apr 18, 2024Updated 2 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Sep 17, 2020Updated 5 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 9 years ago
- ☆26Jun 26, 2025Updated 9 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · …☆61May 26, 2016Updated 9 years ago
- Accelerated genomics workflows in the Workflow Description Language☆37Apr 3, 2026Updated 2 weeks ago