Alternatives and similar repositories for hansel

Users that are interested in hansel are comparing it to the libraries listed below

• Malfoy / Miekki
  Minhash Index Extended to Knead Kmer Intersection
  ☆11Updated 5 years ago
• SamStudio8 / gretel
  An algorithm for recovering haplotypes from metagenomes
  ☆30Updated 4 years ago
• shenwei356 / ncbi_acc2gtdb_acc
  Mapping NCBI Genbank accession to GTDB accession
  ☆13Updated 4 years ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated 2 years ago
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆14Updated 4 years ago
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆13Updated 9 years ago
• sourmash-bio / wort
  A database for signatures of public genomic sources
  ☆18Updated this week
• Malfoy / NIQKI
  Next Index to Query Kmer Intersection
  ☆16Updated 2 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• bede / seqsum
  Robust individual and aggregate checksums for nucleotide sequences
  ☆17Updated last year
• bede / tictax
  Streaming sequence classification with web services ✓📌
  ☆19Updated 2 years ago
• taxburst / taxburst
  sunburst plots for taxonomy - working to update Krona
  ☆41Updated last month
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆33Updated 3 years ago
• bioinfologics / sdg
  Sequence Distance Graph framework: graph + reads + mapping + analysis
  ☆25Updated 3 years ago
• artic-network / readucks
  Nanopore read de-multiplexer
  ☆13Updated 5 years ago
• olgabot / abi2fastq
  abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ
  ☆11Updated 8 years ago
• zorino / kaamer
  kaamer - protein identification based on amino acid kmers
  ☆12Updated 2 years ago
• sourmash-bio / databases
  Build sourmash databases for genbank.
  ☆11Updated 2 years ago
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆25Updated this week
• vsbuffalo / hgindex
  Hierarchical binned indexed data store for on-disk genomic data.
  ☆13Updated 9 months ago
• prophyle / prophyle
  Accurate, resource-frugal and deterministic DNA sequence classifier.
  ☆37Updated last month
• ekg / viral-assembly
  exploring viral genome assembly with variation graph tools
  ☆20Updated 5 years ago
• martinghunt / ziplign
  Simple-to-use interactive comparison of two bacterial genomes
  ☆18Updated this week
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• algbio / matchtigs
  Minimum plain text representation of kmer sets
  ☆16Updated 9 months ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆25Updated 2 years ago
• jaudoux / kamix
  Index and query k-mer matrices in BGZF
  ☆12Updated 7 years ago
• mbhall88 / skc
  Shared k-mer content between two genomes
  ☆18Updated 2 years ago
• rvaser / sword
  SWORD - a highly efficient protein database search
  ☆26Updated last year
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated last year