SamStudio8 / hansel
A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence
☆17Updated 3 years ago
Alternatives and similar repositories for hansel
Users that are interested in hansel are comparing it to the libraries listed below
Sorting:
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆15Updated 4 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Updated 4 years ago
- An algorithm for recovering haplotypes from metagenomes☆31Updated 3 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆16Updated last year
- ☆14Updated 9 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Updated 7 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Updated 9 months ago
- kaamer - protein identification based on amino acid kmers☆12Updated 2 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 5 years ago
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 7 years ago
- Nanopore read de-multiplexer☆13Updated 5 years ago
- Simulate mutations in genomes☆15Updated 4 years ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- Strain resolved metagenome simulator☆13Updated 6 years ago
- Shared k-mer content between two genomes☆17Updated last year
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 3 months ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- ☆15Updated last month
- A database for signatures of public genomic sources☆18Updated 2 months ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Updated 4 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Variant call adjudication☆16Updated 11 months ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 2 years ago
- Fast viral consensus genome reconstruction☆22Updated 4 months ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago