A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence
☆17Jun 29, 2021Updated 4 years ago
Alternatives and similar repositories for hansel
Users that are interested in hansel are comparing it to the libraries listed below
Sorting:
- An algorithm for recovering haplotypes from metagenomes☆30Jun 29, 2021Updated 4 years ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 2 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆31Mar 6, 2026Updated 2 weeks ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- A genomic minhashing implementation in Rust☆103Jun 17, 2025Updated 9 months ago
- Histosketching Using Little Kmers☆57May 25, 2023Updated 2 years ago
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 3 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- Go implementation of ntHash☆20Sep 16, 2021Updated 4 years ago
- Sequential Tree Sampler for online phylogenetics☆16Mar 19, 2019Updated 7 years ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- Go port of wyhash v3☆14Nov 1, 2022Updated 3 years ago
- AWS lambda S3 + rust-htslib: A serverless bioinformatics example☆14Jun 7, 2022Updated 3 years ago
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆118Jan 29, 2026Updated last month
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆48Feb 5, 2026Updated last month
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated 10 months ago
- ☆43Apr 20, 2016Updated 9 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- Pan-genome inference and genotyping with long noisy or short accurate reads☆119Dec 13, 2024Updated last year
- Flexible omics pipeline☆17Oct 16, 2025Updated 5 months ago
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆12Jul 19, 2023Updated 2 years ago
- Bitpacked sequence trait and implementation☆16Feb 27, 2026Updated 3 weeks ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆27Oct 20, 2023Updated 2 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆124Aug 24, 2023Updated 2 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Fast viral consensus genome reconstruction☆26Feb 5, 2026Updated last month
- Searching large collections of sequencing data with genome-scale queries☆17Feb 5, 2026Updated last month
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 4 years ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 2 years ago
- A Brand New LSH: The fly’s olfactory circuits algorithm☆11May 2, 2018Updated 7 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 4 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 5 years ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Build sourmash databases for genbank.☆11May 4, 2023Updated 2 years ago
- A command line utilty for working with BINSEQ files☆36Feb 28, 2026Updated 3 weeks ago
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆53Mar 7, 2026Updated last week