Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.
☆19Nov 30, 2017Updated 8 years ago
Alternatives and similar repositories for nanopore_simulation
Users that are interested in nanopore_simulation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Dec 16, 2016Updated 9 years ago
- ☆26Oct 31, 2019Updated 6 years ago
- The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.☆122Oct 20, 2020Updated 5 years ago
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆11Nov 10, 2025Updated 8 months ago
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆17Jun 4, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a simulator of long read sequencing in pacbio and oxford nanopore☆15Oct 13, 2016Updated 9 years ago
- MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences☆15Jan 14, 2022Updated 4 years ago
- ☆27Dec 29, 2020Updated 5 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆75May 20, 2022Updated 4 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Feb 19, 2021Updated 5 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Apr 21, 2021Updated 5 years ago
- Searching large collections of sequencing data with genome-scale queries☆19Updated this week
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- Implements a modified version of the CUSUM algorithm for robust detection of step-like changes time-series data☆15Jul 2, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Feb 16, 2024Updated 2 years ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆15Jul 6, 2026Updated 2 weeks ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- a tool for simulating nanopore raw signal data☆81Mar 4, 2026Updated 4 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆125Jan 18, 2021Updated 5 years ago
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Sep 21, 2022Updated 3 years ago
- Portable Forth Environment - full implementation of Standard Forth in portable C, allowing cross-compiling of binary Forth extension modu…☆12Oct 22, 2018Updated 7 years ago
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Portable corewar system with ICWS'94 extensions☆16Mar 21, 2018Updated 8 years ago
- Automatically calculate phylogenetic trees from bacterial core genes☆20May 28, 2026Updated last month
- Nanopore sequence read simulator☆308Mar 12, 2026Updated 4 months ago
- Bluetooth Terminal Emulator for J2ME Devices.☆13Oct 5, 2010Updated 15 years ago
- ☆49Nov 7, 2024Updated last year
- NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization☆33Apr 19, 2020Updated 6 years ago
- MetaCRAST: reference-guided CRISPR detection in metagenomes☆13Mar 10, 2020Updated 6 years ago
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- VBZ compression plugin for nanopore signal data☆44Apr 7, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A MinION-based pipeline for tracking species biodiversity☆13Feb 19, 2024Updated 2 years ago
- Free your Xoss device: a cloud-free reimplementation of Xoss companion app☆13Jun 14, 2023Updated 3 years ago
- ☆23Jan 18, 2026Updated 6 months ago
- Arduino and Python code to transfer Psion Organiser II pack images between a PC and a datapak/rampak via an Arduino☆14May 14, 2023Updated 3 years ago
- CRyPTIC data processing pipelines☆35Jul 18, 2024Updated 2 years ago
- Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warping for nanopore raw signal search (DSDTWnano) and the con…☆10Jul 13, 2020Updated 6 years ago
- A basecaller for Oxford Nanopore Technologies' sequencers☆121Jul 6, 2023Updated 3 years ago