crohrandt / nanopore_simulation
Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.
☆19Updated 7 years ago
Alternatives and similar repositories for nanopore_simulation:
Users that are interested in nanopore_simulation are comparing it to the libraries listed below
- ☆46Updated 3 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆36Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Full-length de novo viral haplotype reconstruction from noisy long reads☆17Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆33Updated 3 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆53Updated 3 months ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆58Updated 5 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 5 months ago
- Structural variant caller☆54Updated 3 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- CRyPTIC data processing pipelines☆32Updated 7 months ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆46Updated 7 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- Nanopore raw signal repeat detection pipeline☆45Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated 10 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- ☆26Updated 5 years ago
- De novo transcriptome assembler for short reads☆62Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago