crohrandt / nanopore_simulationLinks
Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.
☆19Updated 8 years ago
Alternatives and similar repositories for nanopore_simulation
Users that are interested in nanopore_simulation are comparing it to the libraries listed below
Sorting:
- ☆49Updated last year
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 5 years ago
- de novo virus assembler of Illumina paired reads☆58Updated 4 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆36Updated 4 years ago
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆93Updated 3 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 5 years ago
- Analysis components from Oxford Nanopore Research☆96Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Python client library for Guppy☆32Updated 3 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Updated 7 years ago
- Nanopore raw signal repeat detection pipeline☆45Updated 2 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆48Updated 8 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 5 years ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆72Updated 3 years ago
- Webin command line submission program.☆37Updated 2 months ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆45Updated this week
- a tool for simulating nanopore raw signal data☆70Updated 2 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Updated 6 years ago
- Genome comparison via de Bruijn graph. To get the latest stable version, please visit our site.☆70Updated 5 years ago
- Visualize whole genome alignments as linear maps☆74Updated 4 months ago