Tropini-lab / PUPpyLinks
Pipeline to design taxon-specific primes in defined bacterial communities.
☆23Updated 10 months ago
Alternatives and similar repositories for PUPpy
Users that are interested in PUPpy are comparing it to the libraries listed below
Sorting:
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆67Updated last week
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆45Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆50Updated 11 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 10 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- ☆41Updated 6 months ago
- ☆45Updated 2 years ago
- A package to annotate protein sequences☆60Updated 9 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆31Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 8 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆39Updated 2 months ago
- ☆32Updated 2 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 3 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated last year
- ☆31Updated 11 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆60Updated last year
- Prophage Activity Estimator☆28Updated last year
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆22Updated 2 weeks ago
- ☆80Updated 2 weeks ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆37Updated last year
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated last month
- ☆17Updated 3 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Updated 3 weeks ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- ☆30Updated last month
- Unified Human Gut Virome Catalog☆38Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- ☆61Updated last year