nebiolabs / VarSkip
VarSkip multiplex PCR designs for SARS-CoV-2 sequencing
☆14Updated 2 years ago
Alternatives and similar repositories for VarSkip:
Users that are interested in VarSkip are comparing it to the libraries listed below
- CFSAN Shigella Typing Pipeline☆14Updated last year
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆24Updated 6 months ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 3 years ago
- Intra-species bacterial contamination detection☆25Updated 2 months ago
- ☆26Updated last year
- Microbial agile accurate SNP Typer☆29Updated last year
- ☆14Updated 3 years ago
- SARs-CoV-2 Primer schemes☆15Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Population analysis PIPEline 🛠🧬☆16Updated last week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- UPHL's Reference Free Pipeline☆26Updated last week
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Surveillance of pathogens using population genomics and sequencing☆22Updated this week
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Read contamination removal☆25Updated last year
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Updated 4 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆37Updated last week
- Influenza genome analysis Nextflow workflow☆22Updated 2 weeks ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆37Updated 2 months ago
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Updated 2 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated 10 months ago
- Remove human reads from a sequencing run☆40Updated 6 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆21Updated 2 weeks ago
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆13Updated last month
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago