nebiolabs / VarSkipLinks
VarSkip multiplex PCR designs for SARS-CoV-2 sequencing
☆14Updated 3 years ago
Alternatives and similar repositories for VarSkip
Users that are interested in VarSkip are comparing it to the libraries listed below
Sorting:
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 6 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- ☆26Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- CFSAN Shigella Typing Pipeline☆15Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Recombination-free trees☆63Updated 5 months ago
- Gene-flank analysis tool☆37Updated last year
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Updated last year
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆14Updated last year
- SARs-CoV-2 Primer schemes☆16Updated 8 months ago
- Colinear block visualisation tool☆31Updated 2 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆37Updated 2 weeks ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- ☆14Updated 4 years ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 months ago
- Intra-species bacterial contamination detection☆25Updated this week
- Quality control plotting for long reads☆10Updated last year
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆13Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 weeks ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 5 months ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 6 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆61Updated 2 months ago
- ASMNGS20 - 2020 Conference Details☆15Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated 2 weeks ago