Phylogenetic compression of extremely large genome collections [661k βππ²ππΆπ | BIGSIdata βπ°π΄ππΆπ | AllTheBact'23 βπ³π±ππΆπ]
β47Apr 1, 2025Updated last year
Alternatives and similar repositories for MiniPhy
Users that are interested in MiniPhy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)β41Apr 17, 2024Updated 2 years ago
- Follow up to Grace Blackwell's 661k dataset, for 2023β141Apr 10, 2026Updated last month
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classificationβ14Apr 8, 2024Updated 2 years ago
- Bifrost graph gene caller.β98Apr 12, 2026Updated last month
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomesβ22Apr 27, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectorsβ31Aug 26, 2024Updated last year
- Plasmid analysis using rearrangement distancesβ55May 13, 2026Updated 2 weeks ago
- Rapid estimation of phylogenetic trees using sketchingβ13Feb 18, 2025Updated last year
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisonsβ21Dec 9, 2025Updated 5 months ago
- ProphAsm β a rapid computation of simplitigs directly from k-mer setsβ25Feb 17, 2023Updated 3 years ago
- PopPUNK π¨βπ€ (POPulation Partitioning Using Nucleotide Kmers)β108Mar 2, 2026Updated 2 months ago
- π¦ π§¬π§βπ»π Microbial genomes-to-report pipelineβ74Mar 14, 2026Updated 2 months ago
- Resolving Species Level Classification Using Emuβ14Jun 14, 2024Updated last year
- Library of sketching functions used by PopPUNKβ31Mar 31, 2025Updated last year
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Visualize microbial evolution at the SNP level!β15Aug 12, 2025Updated 9 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.β66Apr 10, 2025Updated last year
- software to identify primers that can distinguish genomesβ20Jan 23, 2026Updated 4 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphsβ52Mar 26, 2026Updated 2 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenomeβ35Apr 26, 2026Updated last month
- β14Jan 20, 2016Updated 10 years ago
- Index kmtricks bf matricesβ49Apr 29, 2026Updated last month
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignmentβ65Jun 16, 2025Updated 11 months ago
- app to collapse Pango lineages for reportingβ13Dec 9, 2025Updated 5 months ago
- End-to-end encrypted email - Proton Mail β’ AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.β304Feb 3, 2026Updated 3 months ago
- Genomic neighbor typing of bacterial pathogens using MinHashβ42Jan 10, 2023Updated 3 years ago
- Overview of our data for microbial genomic benchmarkingβ37Apr 22, 2026Updated last month
- Split k-mer analysis β version 2β104Apr 9, 2026Updated last month
- β18Jun 11, 2024Updated last year
- Neptune: Genomic Signature Discoveryβ21May 1, 2026Updated 3 weeks ago
- Searching large collections of sequencing data with genome-scale queriesβ18May 19, 2026Updated last week
- A tool to detect acquired AMR genes directly from long read sequencing data.β28Jan 31, 2026Updated 3 months ago
- β11Mar 10, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptopβ74Apr 1, 2026Updated last month
- Chimera: A Versatile Metagenomic Classification Toolβ21Feb 1, 2026Updated 3 months ago
- TAXnomic Profile Aggregation and STAndardisationβ44May 2, 2026Updated 3 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.β252May 13, 2026Updated 2 weeks ago
- Real-time species-typing visualisation for nanopore data.β13Apr 11, 2023Updated 3 years ago
- Fast DNA search and [host] depletion using minimizersβ111Apr 14, 2026Updated last month
- β10Jun 9, 2025Updated 11 months ago