Phylogenetic compression of extremely large genome collections [661k βππ²ππΆπ | BIGSIdata βπ°π΄ππΆπ | AllTheBact'23 βπ³π±ππΆπ]
β49Jun 19, 2026Updated 3 months ago
Alternatives and similar repositories for MiniPhy
Users that are interested in MiniPhy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)β42Apr 17, 2024Updated 2 years ago
- Follow up to Grace Blackwell's 661k dataset, for 2023β156Jun 10, 2026Updated 3 months ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classificationβ14Apr 8, 2024Updated 2 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomesβ24Jul 11, 2026Updated 2 months ago
- Plasmid analysis using rearrangement distancesβ56Jul 19, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bifrost graph gene caller.β101Aug 31, 2026Updated 3 weeks ago
- Rapid estimation of phylogenetic trees using sketchingβ13Feb 18, 2025Updated last year
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectorsβ34Aug 26, 2024Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.β72Apr 10, 2025Updated last year
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisonsβ22Sep 9, 2026Updated 2 weeks ago
- Taxonomic Classification of Bacteria and Archaea Genomesβ19Aug 17, 2026Updated last month
- ProphAsm β a rapid computation of simplitigs directly from k-mer setsβ25Feb 17, 2023Updated 3 years ago
- PopPUNK π¨βπ€ (POPulation Partitioning Using Nucleotide Kmers)β112Jun 2, 2026Updated 3 months ago
- A new high-resolution long-read metagenome assembler for even noisy readsβ173Sep 9, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- β20Sep 16, 2026Updated last week
- PanTax: Strain-level metagenomic profiling using pangenome graphsβ55Jun 10, 2026Updated 3 months ago
- Resolving Species Level Classification Using Emuβ14Jun 14, 2024Updated 2 years ago
- β‘π¦ π§¬π Rapid microbial genomes-to-report pipelineβ76Updated this week
- software to identify primers that can distinguish genomesβ20Aug 31, 2026Updated 3 weeks ago
- Library of sketching functions used by PopPUNKβ31Jun 8, 2026Updated 3 months ago
- Visualize microbial evolution at the SNP level!β18Aug 12, 2025Updated last year
- sunburst plots for taxonomy - working to update Kronaβ48Sep 22, 2025Updated last year
- A tool to detect acquired AMR genes directly from long read sequencing data.β28Jan 31, 2026Updated 7 months ago
- Open source password manager - Proton Pass β’ AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- β37Updated this week
- A mathematically characterized hypothesis test for organism presence/absence in a metagenomeβ38Apr 26, 2026Updated 5 months ago
- Fast DNA search and [host] depletion using minimizersβ127Updated this week
- Index kmtricks bf matricesβ49Sep 20, 2026Updated last week
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassemblyβ79Sep 7, 2026Updated 3 weeks ago
- Overview of our data for microbial genomic benchmarkingβ41Jun 19, 2026Updated 3 months ago
- β14Jan 20, 2016Updated 10 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignmentβ66Jun 16, 2025Updated last year
- Ultrafast identification of signature sequences in microbial genomesβ20Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- LexicMap: efficient sequence alignment against millions of prokaryotic genomesβ227Sep 15, 2026Updated last week
- app to collapse Pango lineages for reportingβ13Dec 9, 2025Updated 9 months ago
- Genomic neighbor typing of bacterial pathogens using MinHashβ42Jan 10, 2023Updated 3 years ago
- Precise host read removalβ132Apr 13, 2026Updated 5 months ago
- Neptune: Genomic Signature Discoveryβ22May 1, 2026Updated 4 months ago
- β18Jun 11, 2024Updated 2 years ago
- Split k-mer analysis β version 2β106Jul 9, 2026Updated 2 months ago