NathanWhelan / automate-PAML-codeml
☆10Updated 6 years ago
Alternatives and similar repositories for automate-PAML-codeml:
Users that are interested in automate-PAML-codeml are comparing it to the libraries listed below
- A comparative genome scaffolding tool☆17Updated 6 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆14Updated 2 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- Segmental duplication detection tool☆13Updated 2 years ago
- ☆15Updated 7 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 5 years ago
- profile the repeat landscape in a genome☆15Updated 10 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated last year
- ☆19Updated last year
- Genomic Assemblies Merger for NGS☆26Updated last year
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- Visualising discordant reads☆15Updated 9 years ago
- transposable element typing pipeline☆17Updated 11 months ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- ☆10Updated 10 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- ☆15Updated 4 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- genomic alignment similarity search tool☆18Updated 9 months ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆11Updated 9 months ago
- Scaffolding with assembly likelihood optimization☆20Updated 4 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 8 years ago
- Parallel implementation of OrthoMCL☆21Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- ☆15Updated 3 years ago
- Better Alignments with Translated HMMER☆17Updated this week