☆11Apr 20, 2018Updated 8 years ago
Alternatives and similar repositories for automate-PAML-codeml
Users that are interested in automate-PAML-codeml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Upscaling SV detection to a multi-population level.☆22Jul 28, 2025Updated last year
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 7 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 10 years ago
- A long-read SV calling pipeline☆12Aug 13, 2021Updated 5 years ago
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Analysis of large inversions using SNP data☆10Jul 29, 2025Updated last year
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- ☆83Jun 2, 2023Updated 3 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project☆14Sep 18, 2018Updated 8 years ago
- NCBI download and Orthofinder analysis☆14Jun 17, 2022Updated 4 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 8 months ago
- A Visual Analytics Tool for Pangenomic Variant Analysis☆12Jun 23, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Structural variant merging tool☆58Aug 23, 2024Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆39Oct 27, 2025Updated last year
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆18Mar 10, 2022Updated 4 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 5 years ago
- Prior-Oblivious Length Estimation in Genealogies with Oriented Network☆13Jan 22, 2025Updated last year
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 6 years ago
- The multivariate MArginal ePIstasis Test☆14Feb 20, 2026Updated 8 months ago
- Model-free inference of tree sequences from unphased genotypes☆13May 22, 2026Updated 5 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆14Jul 13, 2020Updated 6 years ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- Analyses pipelines that I use for my work☆12Jul 7, 2021Updated 5 years ago
- ☆14Dec 12, 2017Updated 8 years ago
- This is code for running Orthofinder -> PAML☆14Jul 27, 2016Updated 10 years ago
- Extract SNPs and accessory differences in closely related bacterial genomes from k-mers☆10Jan 6, 2024Updated 2 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Mar 18, 2019Updated 7 years ago
- seqqs is a C program/library for gathering quality statistics from sequencing data☆12May 12, 2014Updated 12 years ago
- Better Alignments with Translated HMMER☆28Oct 31, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Collection of galaxy tools developed by the artbio-platform at the IBPS (Institut de Biologie Paris-Seine)☆13Sep 14, 2026Updated last month
- Biopsy - the Bioinformatic Optimisation System☆16Nov 1, 2015Updated 11 years ago
- Embeddings to Network Alignment - align biological networks between two species☆10Sep 8, 2023Updated 3 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆80Feb 11, 2022Updated 4 years ago
- FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing☆45Dec 21, 2021Updated 4 years ago
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 7 years ago
- R Port of psmc☆16Mar 16, 2023Updated 3 years ago