NathanWhelan / automate-PAML-codeml

Related projects ⓘ

Alternatives and complementary repositories for automate-PAML-codeml

• aesheppard / TETyper
  transposable element typing pipeline
  ☆17Updated 8 months ago
• mahulchak / mscaffolder
  A comparative genome scaffolding tool
  ☆17Updated 6 years ago
• nlapalu / SDDetector
  Segmental duplication detection tool
  ☆12Updated last year
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆20Updated 4 years ago
• mthon / mirlo
  A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.
  ☆13Updated 5 years ago
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆22Updated 3 years ago
• aewebb80 / VESPA
  VESPA: Very large-scale Evolutionary and Selective Pressure Analyses
  ☆14Updated 2 years ago
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 4 years ago
• photocyte / plot_mitochondrial_genome_with_CIRCOS
  ☆15Updated 6 years ago
• mpdunne / orthofiller
  OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.
  ☆22Updated last year
• wen-biao / OM-HiC-scaffolding
  Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data
  ☆21Updated 4 years ago
• gf777 / mitoVGP
  The Vertebrate Genomes Project Mitogenome Assembly Pipeline
  ☆18Updated last year
• mjsull / DiscoPlot
  Visualising discordant reads
  ☆15Updated 9 years ago
• vice87 / gam-ngs
  Genomic Assemblies Merger for NGS
  ☆26Updated last year
• caballero / RepeatLandscape
  profile the repeat landscape in a genome
  ☆15Updated 10 years ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆20Updated 3 years ago
• zeeev / DASVC
  De-novo Assembly Structural Variant Caller
  ☆13Updated 8 years ago
• CMU-SAFARI / FastRemap
  FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…
  ☆26Updated 2 years ago
• bioinfologics / w2rap
  WGS (Wheat) Robust Assembly Pipeline
  ☆22Updated 3 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 6 years ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆15Updated 3 weeks ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆21Updated 2 months ago
• lh3 / gffio
  ☆32Updated last year
• kammoji / gapFinisher
  A reliable gap filling pipeline for draft genomes
  ☆11Updated 5 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated 6 months ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆22Updated 3 years ago
• lh3 / TRF-mod
  Tandem Repeats Finder: a program to analyze DNA sequences
  ☆14Updated 2 years ago
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 2 years ago