NathanWhelan / automate-PAML-codemlLinks
☆10Updated 7 years ago
Alternatives and similar repositories for automate-PAML-codeml
Users that are interested in automate-PAML-codeml are comparing it to the libraries listed below
Sorting:
- Parallel implementation of OrthoMCL☆21Updated 3 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- ☆15Updated 7 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Updated 3 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆24Updated 3 weeks ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- ☆32Updated 2 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Better Alignments with Translated HMMER☆21Updated last week
- Segmental duplication detection tool☆16Updated 2 years ago
- Demographic inference from whole genomes☆13Updated 2 years ago
- transposable element typing pipeline☆19Updated last year
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- Benchmark structural variant calls against a reference set☆17Updated 10 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆20Updated last year
- De novo VIral Genome Annotator☆23Updated 11 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Reference genome quality scores☆21Updated 4 years ago