☆16Jan 21, 2024Updated 2 years ago
Alternatives and similar repositories for mastiff
Users that are interested in mastiff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Oct 14, 2020Updated 6 years ago
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 3 months ago
- Tools and utilities for making use of mastiff☆12Mar 10, 2023Updated 3 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 3 years ago
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Working with the outputs of sourmash in R☆29Jan 15, 2026Updated 9 months ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Oct 4, 2023Updated 3 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated this week
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 3 months ago
- 🐪Classification through yAML Heuristic Mapping Protocol 🐪☆10Updated this week
- Pipeline to apply encoded Kmer analysis to protein sequences☆17Jun 22, 2026Updated 4 months ago
- Repository with materials for the Speeding Up Science Workshops at UC Davis☆10Oct 31, 2019Updated 7 years ago
- A tutorial for Metagenome-Atlas☆23Nov 24, 2023Updated 2 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- repo for cicese metatranscriptomics workshop, nov 2018☆14Jan 22, 2020Updated 6 years ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 8 months ago
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆120Jan 29, 2026Updated 9 months ago
- notes on the farm cluster☆16Feb 26, 2025Updated last year
- Library of sketching functions used by PopPUNK☆29Jun 8, 2026Updated 4 months ago
- Surveillance of pathogens using population genomics and sequencing☆62Updated this week
- assemble, annotate, and assess transcriptomes in a single step☆10Mar 16, 2017Updated 9 years ago
- Classify sequencing reads using MinHash.☆47Apr 6, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An R Markdown template using the bookdown package for preparing a PhD thesis at the University of California Davis☆16Dec 6, 2023Updated 2 years ago
- NCBI Taxonomy History Browser☆10May 7, 2026Updated 5 months ago
- Nextflow version of SNVPhyl☆12Oct 24, 2024Updated 2 years ago
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- Approximate nearest neighbour search for microbial genomes based on hash metric☆66Sep 19, 2026Updated last month
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 7 years ago
- TAXnomic Profile Aggregation and STAndardisation☆43May 2, 2026Updated 6 months ago
- Assembly based core genome SNP alignments for bacteria☆25Oct 23, 2019Updated 7 years ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 9 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes☆13Sep 12, 2026Updated last month
- ☆114Apr 23, 2026Updated 6 months ago
- A genomic minhashing implementation in Rust☆100Jul 8, 2026Updated 3 months ago
- Searching large collections of sequencing data with genome-scale queries☆23Oct 25, 2026Updated last week
- A SIMD-accelerated library to compute random minimizers☆49Oct 26, 2026Updated last week
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆29Feb 6, 2023Updated 3 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago