sourmash-bio / mastiffLinks
☆16Updated last year
Alternatives and similar repositories for mastiff
Users that are interested in mastiff are comparing it to the libraries listed below
Sorting:
- A database for signatures of public genomic sources☆18Updated this week
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated this week
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- map Illumina metagenomes to genomes!☆38Updated last month
- Finding prophage regions in bacterial genomes using brute force☆21Updated 2 years ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆43Updated 7 months ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆47Updated 3 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated last month
- Simple-to-use interactive comparison of two bacterial genomes☆18Updated this week
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆33Updated last month
- Efficient and fast querying and parsing of GTDB's data☆29Updated 2 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 7 months ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆26Updated 3 months ago
- De novo VIral Genome Annotator☆23Updated last year
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆37Updated last month
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 2 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Updated last month
- Remove human reads from a sequencing run☆40Updated 3 months ago
- Fast viral consensus genome reconstruction☆25Updated 3 months ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆11Updated 2 years ago