sourmash-bio / mastiffLinks
☆16Updated last year
Alternatives and similar repositories for mastiff
Users that are interested in mastiff are comparing it to the libraries listed below
Sorting:
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆47Updated 4 months ago
- A database for signatures of public genomic sources☆18Updated 3 weeks ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆11Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated last week
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆14Updated last year
- Finding prophage regions in bacterial genomes using brute force☆21Updated 2 years ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆43Updated 7 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated last month
- ☆18Updated last year
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Updated 11 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Updated last week
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆39Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 8 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆18Updated last week
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆56Updated 7 months ago
- Manipulate and generate figures for trees in Newick format☆22Updated 3 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated last week
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆33Updated last week
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆29Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- map Illumina metagenomes to genomes!☆38Updated last week
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 6 months ago