Alternatives and similar repositories for mastiff:

Users that are interested in mastiff are comparing it to the libraries listed below

• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆21Updated this week
• karel-brinda / MiniPhy
  Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]
  ☆21Updated last month
• sourmash-bio / wort
  A database for signatures of public genomic sources
  ☆18Updated 2 months ago
• KoslickiLab / YACHT
  A mathematically characterized hypothesis test for organism presence/absence in a metagenome
  ☆30Updated last month
• phiweger / uv
  Finding prophage regions in bacterial genomes using brute force
  ☆22Updated last year
• moritzbuck / mOTUlizer
  Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin
  ☆12Updated 3 months ago
• jolespin / pykofamsearch
  Fast implementation of KofamScan optimized for high-memory systems using PyHmmer
  ☆11Updated 2 months ago
• pirovc / grimer
  GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…
  ☆22Updated last year
• oxli-bio / oxli
  k-mers and the like
  ☆20Updated this week
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆20Updated 2 months ago
• dhelekal / CaveDive
  ☆17Updated 7 months ago
• taxprofiler / taxpasta
  TAXnomic Profile Aggregation and STAndardisation
  ☆34Updated 2 months ago
• kangxiongbin / StrainXpress
  StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…
  ☆13Updated 10 months ago
• moshi4 / pybarrnap
  Python implementation of barrnap (Bacterial ribosomal RNA predictor)
  ☆16Updated 4 months ago
• lmc297 / BTyper3
  In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data
  ☆19Updated 8 months ago
• tseemann / seeka
  Get microbial sequence data easier and faster
  ☆28Updated 5 years ago
• c2-d2 / disty
  Disty McMatrixface - compute a distance matrix from a core genome alignment file
  ☆13Updated last year
• KThorellGroup / BACTpipe
  BACTpipe: An assembly and annotation pipeline for bacterial genomics
  ☆20Updated last month
• althonos / pysylph
  PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.
  ☆17Updated last month
• nick-youngblut / traitar3
  From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
  ☆22Updated 6 months ago
• Kalan-Lab / codoff
  codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the fu…
  ☆11Updated 5 months ago
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆43Updated this week
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated 5 months ago
• LottePronk / whokaryote
  Classify metagenomic contigs as eukaryotic or prokaryotic
  ☆32Updated last year
• rcedgar / newick
  Manipulate and generate figures for trees in Newick format
  ☆21Updated last year
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆35Updated 3 months ago
• Microbiology / ccontigs
  Detect contigs of complete circular genomes
  ☆22Updated 5 years ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆20Updated last week
• katholt / AMRrules
  Organism-specific interpretation of AMR genotypes
  ☆9Updated 10 months ago