☆16Jan 21, 2024Updated 2 years ago
Alternatives and similar repositories for mastiff
Users that are interested in mastiff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Oct 14, 2020Updated 5 years ago
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 2 months ago
- Tools and utilities for making use of mastiff☆12Mar 10, 2023Updated 3 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Working with the outputs of sourmash in R☆29Jan 15, 2026Updated 8 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Updated this week
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Oct 4, 2023Updated 2 years ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆17Jun 22, 2026Updated 3 months ago
- Repository with materials for the Speeding Up Science Workshops at UC Davis☆10Oct 31, 2019Updated 6 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Jan 22, 2020Updated 6 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 6 months ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated last month
- A tutorial for Metagenome-Atlas☆24Nov 24, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆121Jan 29, 2026Updated 7 months ago
- notes on the farm cluster☆16Feb 26, 2025Updated last year
- Surveillance of pathogens using population genomics and sequencing☆62Sep 3, 2026Updated 3 weeks ago
- Build sourmash databases for genbank.☆10May 4, 2023Updated 3 years ago
- Approximate nearest neighbour search for microbial genomes based on hash metric☆66Sep 19, 2026Updated last week
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- TAXnomic Profile Aggregation and STAndardisation☆45May 2, 2026Updated 4 months ago
- An R Markdown template using the bookdown package for preparing a PhD thesis at the University of California Davis☆16Dec 6, 2023Updated 2 years ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Searching large collections of sequencing data with genome-scale queries☆21Updated this week
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 7 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆29Feb 6, 2023Updated 3 years ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated last year
- ☆113Apr 23, 2026Updated 5 months ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated 2 years ago
- A genomic minhashing implementation in Rust☆101Jul 8, 2026Updated 2 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆557Updated this week
- A SIMD-accelerated library to compute random minimizers☆48Aug 26, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An efficient CLI to extract sequences from the SRA☆130Jun 12, 2026Updated 3 months ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- ☆11Dec 24, 2024Updated last year
- Minimum plain text representation of kmer sets☆19Jan 30, 2025Updated last year
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated 2 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago