☆16Jan 21, 2024Updated 2 years ago
Alternatives and similar repositories for mastiff
Users that are interested in mastiff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Oct 14, 2020Updated 5 years ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 4 months ago
- Tools and utilities for making use of mastiff☆12Mar 10, 2023Updated 3 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Surveillance of pathogens using population genomics and sequencing☆60Apr 30, 2026Updated 3 weeks ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 4 months ago
- Working with the outputs of sourmash in R☆29Jan 15, 2026Updated 4 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Updated this week
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Oct 4, 2023Updated 2 years ago
- Repository with materials for the Speeding Up Science Workshops at UC Davis☆10Oct 31, 2019Updated 6 years ago
- Searching large collections of sequencing data with genome-scale queries☆18May 19, 2026Updated last week
- Pipeline to apply encoded Kmer analysis to protein sequences☆16May 15, 2026Updated 2 weeks ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Jan 22, 2020Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆119Jan 29, 2026Updated 4 months ago
- A tutorial for Metagenome-Atlas☆24Nov 24, 2023Updated 2 years ago
- A SIMD-accelerated library to compute random minimizers☆43Apr 6, 2026Updated last month
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- Build sourmash databases for genbank.☆10May 4, 2023Updated 3 years ago
- Approximate nearest neighbour search for microbial genomes based on hash metric☆66Mar 7, 2026Updated 2 months ago
- notes on the farm cluster☆16Feb 26, 2025Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 3 weeks ago
- An R Markdown template using the bookdown package for preparing a PhD thesis at the University of California Davis☆16Dec 6, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A repo with just adapter sequences☆15Jul 7, 2025Updated 10 months ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆27Feb 6, 2023Updated 3 years ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 8 months ago
- Development repo for pyani-plus (the next iteration of pyani)☆33May 19, 2026Updated last week
- ☆112Apr 23, 2026Updated last month
- A genomic minhashing implementation in Rust☆103Jun 17, 2025Updated 11 months ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated 2 years ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆542May 21, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An efficient CLI to extract sequences from the SRA☆122Mar 4, 2026Updated 2 months ago
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆19Apr 24, 2026Updated last month