jhuapl-bio / taxtriage
TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.
☆23Updated this week
Related projects ⓘ
Alternatives and complementary repositories for taxtriage
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆32Updated this week
- Recombination-free trees☆56Updated last year
- Split Kmer Analysis☆63Updated 2 years ago
- Influenza data pipeline to automate genotyping assignment☆21Updated 2 weeks ago
- ☆18Updated last week
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆29Updated last month
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆26Updated last year
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Influenza genome analysis Nextflow workflow☆22Updated last week
- Fast and space-efficient taxonomic classification of long reads☆42Updated last week
- UPHL's Reference Free Pipeline☆25Updated this week
- Fast k-mer based tool for multi locus sequence typing (MLST)☆42Updated 4 years ago
- Predict MLST directly from uncorrected long reads☆25Updated 2 years ago
- ☆35Updated 3 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- ☆27Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆24Updated this week
- TAXnomic Profile Aggregation and STAndardisation☆34Updated last week
- Predict plasmids from uncorrected long read data☆39Updated 4 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆37Updated 2 months ago
- ASMNGS20 - 2020 Conference Details☆15Updated 2 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Precise host read removal☆78Updated 3 weeks ago
- A tool for removing redundant genomes from a set of assemblies☆68Updated last year
- Split k-mer analysis – version 2☆70Updated 2 weeks ago
- CFSAN Shigella Typing Pipeline☆14Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆36Updated 11 months ago
- in silico typing of the H. influenzae cap locus☆11Updated 3 months ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 3 years ago