kClust is a fast and sensitive clustering method for the clustering of protein sequences. It is able to cluster large protein databases down to 20-30% sequence identity. kClust generates a clustering where each cluster is represented by its longest sequence (representative sequence).
☆18Feb 12, 2019Updated 7 years ago
Alternatives and similar repositories for kClust
Users that are interested in kClust are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆20Jul 16, 2021Updated 5 years ago
- Bayesian multiple logistic regression for GWAS meta-analysis☆17Aug 20, 2025Updated last year
- This is a simple script to use [plip](https://github.com/pharmai/plip) to batch analysis of interactions between proteins and ligands tha…☆10Dec 23, 2020Updated 5 years ago
- Improved ab initio protein structure reconstruction☆15Mar 7, 2018Updated 8 years ago
- ☆14Sep 19, 2016Updated 10 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆10Nov 10, 2023Updated 2 years ago
- OPUS-SSRI☆13Dec 21, 2022Updated 3 years ago
- Predict prokaryotic host for phage metagenomic sequences☆57Sep 17, 2024Updated 2 years ago
- Python package for virtual screening of generated molecules using autodock-vina and tensorflow☆14Mar 22, 2021Updated 5 years ago
- Searching large collections of sequencing data with genome-scale queries☆23Updated this week
- Bayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by…☆20Oct 5, 2017Updated 9 years ago
- Tejaas - a tool for discovering trans-eQTLs☆12Oct 14, 2022Updated 4 years ago
- ☆23Aug 28, 2020Updated 6 years ago
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆12Dec 14, 2025Updated 10 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A parallel molecular docking program based on AutoDock Vina☆19Sep 29, 2025Updated last year
- MEGADOCK on Google Colaboratory☆20Oct 2, 2023Updated 3 years ago
- 📦 A Command Line Tool for downloading protein structures, sequences and MSAs☆10Nov 21, 2017Updated 8 years ago
- genome sized sequences clustering☆16Dec 29, 2020Updated 5 years ago
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- An MPI based parallel implementation of Autodock Vina☆17Apr 3, 2020Updated 6 years ago
- GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes☆12Oct 17, 2026Updated last week
- Autodock/Vina plugin for PyMol by Daniel Seeliger☆28Oct 23, 2017Updated 9 years ago
- We propose PepBCL, a novel BERT (Bidirectional Encoder Representation from Transformers)-based Contrastive Learning framework to predict …☆19Mar 29, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 8 years ago
- An R package to call oomycete effectors☆11Aug 31, 2023Updated 3 years ago
- Generate JSON diffs between pixi lockfiles☆11Oct 1, 2026Updated 3 weeks ago
- ☆15Jan 16, 2018Updated 8 years ago
- PEnG-motif is an open-source software package for searching statistically overrepresented motifs (position specific weight matrices, PWMs…☆10Nov 27, 2019Updated 6 years ago
- ☆11Jan 12, 2015Updated 11 years ago
- ☆12Mar 26, 2020Updated 6 years ago
- ☆17Aug 18, 2012Updated 14 years ago
- Code and models for Molecule-Morphology Contrastive Pretraining (MoCoP)☆13Apr 12, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆10Feb 2, 2024Updated 2 years ago
- Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes;…☆20Sep 2, 2025Updated last year
- A burrows-wheeler transform-based probabilistic short read mapper.☆11Jun 11, 2015Updated 11 years ago
- Software for analyzing multiple protein-protein interaction docking solutions, calculating contact regions using mdtraj, and visualizing …☆12Jun 16, 2017Updated 9 years ago
- Predicting the effect of mutations on protein stability and protein binding affinity using pretrained neural networks and a ranking objec…☆22Mar 29, 2021Updated 5 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆100Jan 26, 2022Updated 4 years ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago