sanger-pathogens / assembly-statsLinks
Get assembly statistics from FASTA and FASTQ files
☆124Updated 2 years ago
Alternatives and similar repositories for assembly-stats
Users that are interested in assembly-stats are comparing it to the libraries listed below
Sorting:
- Version 5 of the CAFE phylogenetics software☆159Updated 11 months ago
- Foreign Contamination Screening caller scripts and documentation☆157Updated 10 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆103Updated 2 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆112Updated 5 months ago
- Long-read mock community experiments☆104Updated 4 years ago
- Reference-free profiling of polyploid genomes☆141Updated 4 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆158Updated 7 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆120Updated 2 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated 2 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆135Updated last year
- Nanopore data assembler☆165Updated 3 years ago
- MITObim - mitochondrial baiting and iterative mapping☆114Updated 5 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆99Updated last year
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Updated 4 years ago
- A list of software for pangenomics☆173Updated last week
- Find, circularise and annotate mitogenome from PacBio assemblies☆191Updated 8 months ago
- Interactive quality assessment of genome assemblies☆118Updated last week
- ☆232Updated last year
- ☆81Updated 5 years ago
- Constructing a pangenome gene graph☆204Updated 5 months ago
- ☆146Updated 3 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆156Updated 2 months ago
- Ultra-fast de novo assembler using long noisy reads☆136Updated 4 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Updated 3 years ago
- Development version of Easyfig☆104Updated 2 years ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆218Updated 5 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago
- Structural Variant Identification Method using Genome Assemblies☆134Updated 3 years ago
- A library for running k-mers based GWAS☆125Updated last year