sanger-pathogens / assembly-statsLinks
Get assembly statistics from FASTA and FASTQ files
☆121Updated 2 years ago
Alternatives and similar repositories for assembly-stats
Users that are interested in assembly-stats are comparing it to the libraries listed below
Sorting:
- Version 5 of the CAFE phylogenetics software☆134Updated 4 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆203Updated last year
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆115Updated last year
- Reference-free profiling of polyploid genomes☆117Updated 2 weeks ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆125Updated 7 months ago
- Nanopore data assembler☆156Updated 3 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago
- Synteny Imager☆63Updated 10 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Updated 4 years ago
- Long-read mock community experiments☆105Updated 3 years ago
- A genome completeness evaluation tool based on miniprot☆213Updated last month
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆147Updated this week
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 4 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆150Updated 4 months ago
- Foreign Contamination Screening caller scripts and documentation☆130Updated 3 months ago
- ☆198Updated 2 months ago
- MITObim - mitochondrial baiting and iterative mapping☆112Updated 4 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆80Updated 4 years ago
- ☆211Updated 5 months ago
- ☆78Updated 4 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆183Updated last month
- Yet another Hi-C scaffolding tool☆153Updated 7 months ago
- Quality control tools for nanopore sequencing data☆109Updated 8 months ago
- ☆79Updated 11 months ago
- OPERA-MS - Hybrid Metagenomic Assembler☆95Updated 11 months ago
- source code for EVM☆112Updated 6 months ago
- A list of software for pangenomics☆117Updated last month
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆104Updated last year
- ☆82Updated last year