gregorykucherov / spaced-seeds-for-metagenomicsLinks
☆14Updated 9 years ago
Alternatives and similar repositories for spaced-seeds-for-metagenomics
Users that are interested in spaced-seeds-for-metagenomics are comparing it to the libraries listed below
Sorting:
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- comb aligner -- a graphical nucleotide sequence alignment tool☆9Updated 8 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 8 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- blast, shmlast☆22Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last month
- Variant call adjudication☆16Updated last year
- Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing☆9Updated 7 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- ☆15Updated 4 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Updated 4 years ago
- reference free variant assembly☆33Updated last year
- ☆12Updated 2 months ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- ☆16Updated 7 years ago
- Build sourmash databases for genbank.☆12Updated 2 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago