gregorykucherov / spaced-seeds-for-metagenomics
☆14Updated 9 years ago
Alternatives and similar repositories for spaced-seeds-for-metagenomics:
Users that are interested in spaced-seeds-for-metagenomics are comparing it to the libraries listed below
- Indel-aware consensus for aligned BAM☆21Updated last month
- Robust individual and aggregate checksums for nucleotide sequences☆16Updated last year
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing☆9Updated 6 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- reference free variant assembly☆32Updated last year
- comb aligner -- a graphical nucleotide sequence alignment tool☆9Updated 8 years ago
- Hidden Markov Model based Copy number caller☆20Updated 3 months ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 3 months ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- Linear-time, low-memory construction of variation graphs☆18Updated 4 years ago
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- Variant call adjudication☆16Updated 7 months ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- blast, shmlast☆21Updated 4 years ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 3 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆14Updated 8 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 9 months ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 5 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- ☆12Updated 3 years ago
- ☆16Updated 6 years ago
- ☆14Updated 2 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago