lmc297 / BTyper3Links
In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data
☆19Updated last year
Alternatives and similar repositories for BTyper3
Users that are interested in BTyper3 are comparing it to the libraries listed below
Sorting:
- CFSAN Shigella Typing Pipeline☆14Updated last year
- ☆16Updated this week
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- Organism-specific interpretation of AMR genotypes☆13Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆29Updated last month
- Targeted Detection and Reconstruction of Plasmids☆20Updated last year
- ☆20Updated 3 weeks ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- Intra-species bacterial contamination detection☆25Updated 4 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated 2 months ago
- Visualize microbial evolution at the SNP level!☆14Updated last month
- ☆23Updated 4 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 8 months ago
- Genome size estimation from long read overlaps☆57Updated 2 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- Remove human reads from a sequencing run☆40Updated 8 months ago
- NCBI Pathogen Detection Portal toolkit☆11Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last week
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆25Updated 8 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated this week
- Quickly get coverage statistics given reads and an assembly☆13Updated last year
- A tool to detect acquired AMR genes directly from long read sequencing data.☆16Updated last week
- Fast viral consensus genome reconstruction☆23Updated 2 weeks ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆11Updated 7 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆14Updated 4 months ago