alexmsalmeida / virsearchLinks
Snakemake workflow to detect and classify viruses in metagenome assemblies.
☆19Updated last year
Alternatives and similar repositories for virsearch
Users that are interested in virsearch are comparing it to the libraries listed below
Sorting:
- Linking MAGs with 16S rRNA marker genes☆26Updated 10 months ago
- ☆54Updated 5 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆82Updated 11 months ago
- ☆20Updated last year
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆43Updated 2 years ago
- ☆61Updated last year
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆12Updated 2 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆67Updated 3 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆81Updated 3 months ago
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆27Updated 7 months ago
- ☆63Updated last year
- ☆50Updated 2 months ago
- ☆24Updated 7 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Updated 3 years ago
- code repo for mobileOG-db☆41Updated last month
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated last year
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆44Updated this week
- ☆31Updated 10 months ago
- ☆40Updated 4 years ago
- ARG normalization by mapping to the ARO ontology.☆60Updated 4 months ago
- Gene Absence Presence Identification tool.☆27Updated 8 months ago
- ☆31Updated last year
- A toolbox for comparative genomics.☆106Updated 4 years ago