arumugamlab / MIntOLinks
Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data
☆14Updated 2 weeks ago
Alternatives and similar repositories for MIntO
Users that are interested in MIntO are comparing it to the libraries listed below
Sorting:
- ☆52Updated 2 weeks ago
- ☆26Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆29Updated 8 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- ☆25Updated 6 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- KEGG Module Evaluation Tool☆30Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated 2 weeks ago
- ☆20Updated 10 months ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated last week
- Bacterial GWAS analysis☆42Updated this week
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆32Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 5 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- ☆13Updated last year
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆26Updated 2 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆59Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Gene Absence Presence Identification tool.☆26Updated 3 months ago
- Calculate assocations between genes and traits☆23Updated 4 months ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 5 years ago
- ☆16Updated 2 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago