arumugamlab / MIntOLinks
Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data
☆15Updated last month
Alternatives and similar repositories for MIntO
Users that are interested in MIntO are comparing it to the libraries listed below
Sorting:
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆12Updated 2 weeks ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Bacterial GWAS analysis☆45Updated 3 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- ☆54Updated 3 months ago
- Calculate assocations between genes and traits☆28Updated 7 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Gene Absence Presence Identification tool.☆27Updated 7 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- KEGG Module Evaluation Tool☆31Updated last year
- ☆26Updated 2 years ago
- ☆14Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆63Updated 2 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 2 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 5 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- ☆20Updated last year
- MAGScoT - a MAG scoring and refinement tool☆37Updated last year
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 2 months ago
- Discover and annotate the virome☆53Updated last week
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆70Updated 2 months ago