arumugamlab / MIntO
Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data
☆14Updated last month
Alternatives and similar repositories for MIntO:
Users that are interested in MIntO are comparing it to the libraries listed below
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- Improvement of metagenome-assembled genomes☆50Updated 5 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆20Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 5 months ago
- ☆20Updated 6 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated last year
- Gene Absence Presence Identification tool.☆26Updated this week
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated last month
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Discover and annotate the virome☆39Updated 5 months ago
- Extract metadata from biosamples in NCBI☆13Updated 3 years ago
- KEGG Module Evaluation Tool☆29Updated last year
- ☆25Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆20Updated last year
- Calculate assocations between genes and traits☆23Updated 3 weeks ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- ☆50Updated 11 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆23Updated 3 weeks ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 11 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- scripts for microbiome analysis☆11Updated 8 months ago
- ☆13Updated last year
- Bacterial GWAS analysis☆39Updated 3 weeks ago
- whole genome MLST analysis☆41Updated this week
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 8 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Prophage Activity Estimator☆26Updated 10 months ago