JunyueCaoLab / EasySci
Computational pipeline to process EasySci-RNA data.
☆14Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for EasySci
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 2 weeks ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆9Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆25Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆44Updated 3 weeks ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆24Updated 2 weeks ago
- Waelchli-lab / Single-cell-atlas-of-the-human-brain-vasculature-accross-development-adulthood-and-diseaseMolecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆11Updated 4 months ago
- ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineageCode and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆9Updated 4 years ago
- ☆17Updated 3 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- ☆19Updated 6 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆16Updated 4 months ago
- A tissue-specific single-cell biological age model☆9Updated last year
- ☆10Updated last year
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆15Updated 2 years ago
- Code used to process the data of the HBCA project☆21Updated 9 months ago
- Difference in Intercellular Communication from scRNA-seq data☆21Updated 10 months ago
- ☆15Updated last year
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆25Updated last year
- Lung cancer 10X analysis☆11Updated 3 years ago
- Spatial transcriptomics of heart tissue☆17Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆25Updated 4 months ago
- Ordering gene-expression and functional events in single-cell experiments☆18Updated 8 months ago
- UHCA☆10Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 8 months ago
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- Network construction Algorithm☆18Updated 2 months ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆37Updated 10 months ago