Alternatives and similar repositories for dragonnfruit:

Users that are interested in dragonnfruit are comparing it to the libraries listed below

• HYsxe / PRINT
  ☆35Updated 7 months ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆40Updated 3 months ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆27Updated last year
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆29Updated 3 weeks ago
• lcmmichielsen / scHPL
  ☆35Updated last month
• lhqing / cemba_data
  Mapping pipeline for snmC-seq based technologies.
  ☆20Updated last year
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆41Updated 9 months ago
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆26Updated 2 years ago
• aertslab / CREsted
  CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…
  ☆35Updated last week
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆48Updated this week
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆23Updated 3 weeks ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated last month
• snehamitra / SCARlink
  ☆50Updated 7 months ago
• soedinglab / merlot
  Reconstruct the lineage topology of a scRNA-seq differentiation dataset.
  ☆18Updated 4 years ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆66Updated this week
• tgac-vumc / BLADE
  BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data
  ☆27Updated last year
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆41Updated last year
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆31Updated last week
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated 11 months ago
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆52Updated 7 months ago
• yal054 / epiformer
  ☆25Updated 10 months ago
• lhe17 / nebula
  ☆37Updated 2 weeks ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆22Updated 5 months ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆80Updated 5 months ago
• broadinstitute / gtex-single-nucleus-reference
  Code repository for the snRNA-seq cross-tissue atlas project
  ☆20Updated 3 years ago
• csoneson / rna_velocity_quant
  Evaluation of the effect of quantification choices on RNA velocity estimates
  ☆27Updated 3 years ago
• cbg-ethz / SCICoNE
  Single-cell copy number calling and event history reconstruction.
  ☆23Updated 3 months ago
• EraslanBas / PerturbDecode
  An end-to-end computational pipeline for large Perturb-seq screens
  ☆13Updated 2 years ago
• beyondpie / CEMBA_wmb_snATAC
  Whole mouse brain snATAC seq analysis
  ☆25Updated 3 weeks ago