A method for analyzing scATAC-seq experiments.
☆33Jun 20, 2025Updated 9 months ago
Alternatives and similar repositories for dragonnfruit
Users that are interested in dragonnfruit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository hosts a minimal version of a Python API for BPNet.☆56Jan 24, 2026Updated 2 months ago
- Identifying transcription factor binding sites from neural network contribution scores☆18Nov 8, 2025Updated 4 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆88Sep 24, 2025Updated 6 months ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆19Mar 12, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆62Dec 8, 2025Updated 3 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆64Mar 20, 2026Updated last week
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆28Feb 21, 2023Updated 3 years ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- A python package for chromVAR☆33May 1, 2023Updated 2 years ago
- Biological sequence analysis for the modern age.☆264Feb 22, 2026Updated last month
- Machine learning methods for DNA sequence analysis.☆61Feb 27, 2026Updated last month
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆12Oct 16, 2025Updated 5 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆97Nov 13, 2025Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆103Jan 31, 2026Updated last month
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆31Mar 17, 2026Updated last week
- ☆12Jan 31, 2023Updated 3 years ago
- Quick pre-QC knee plots for barcode based scRNAseq data☆12Dec 8, 2018Updated 7 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- Evaluation framework for computationally inferred gene networks from single-cell data.☆18Oct 23, 2025Updated 5 months ago
- Universal Single-Cell Genomics Preprocessing package☆49Feb 21, 2026Updated last month
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆59Updated this week
- ☆13Jan 23, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Jan 4, 2022Updated 4 years ago
- ☆15Nov 24, 2025Updated 4 months ago
- Simple scVI implementation☆12Mar 16, 2026Updated last week
- An end-to-end computational pipeline for large Perturb-seq screens☆15Apr 25, 2025Updated 11 months ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆101Sep 9, 2025Updated 6 months ago
- GWAS genetics Fine-mapping method☆17May 17, 2024Updated last year
- ☆19Dec 15, 2023Updated 2 years ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆59Nov 1, 2025Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆61Feb 9, 2026Updated last month
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆214Feb 2, 2026Updated last month
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated 9 months ago
- A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.☆21Jan 3, 2026Updated 2 months ago
- ☆34Jan 27, 2025Updated last year
- ☆12Oct 10, 2024Updated last year
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆32Updated this week