Alternatives and similar repositories for dragonnfruit:

Users that are interested in dragonnfruit are comparing it to the libraries listed below

• pinellolab / pychromVAR
  A python package for chromVAR
  ☆27Updated last year
• lcmmichielsen / scHPL
  ☆34Updated 8 months ago
• EraslanBas / PerturbDecode
  An end-to-end computational pipeline for large Perturb-seq screens
  ☆12Updated last year
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆22Updated 11 months ago
• CostaLab / scopen
  scOpen: single-cell open chromatin analysis via NMF modelling
  ☆25Updated last year
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆47Updated 2 months ago
• lingfeiwang / normalisr
  Causal inference, differential expression, and co-expression for scRNA-seq
  ☆18Updated 3 years ago
• viannegao / ChromaFold
  ☆21Updated 3 months ago
• jacobhepkema / scover
  scover
  ☆22Updated last year
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆20Updated 2 months ago
• broadinstitute / gtex-single-nucleus-reference
  Code repository for the snRNA-seq cross-tissue atlas project
  ☆20Updated 2 years ago
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆48Updated 2 years ago
• lhqing / cemba_data
  Mapping pipeline for snmC-seq based technologies.
  ☆17Updated last year
• karbalayghareh / ENCODE-E2G
  Python package to predict enhancer-gene interactions supervised on CRISPRi data
  ☆13Updated last year
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆36Updated last week
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• csoneson / rna_velocity_quant
  Evaluation of the effect of quantification choices on RNA velocity estimates
  ☆27Updated 3 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆18Updated 4 years ago
• HYsxe / PRINT
  ☆34Updated 4 months ago
• pachterlab / NYMP_2018
  ☆28Updated 5 years ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated last month
• AllonKleinLab / PBA
  Population balance analysis
  ☆44Updated 5 years ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆35Updated 5 years ago
• pachterlab / CGCCP_2023
  scVI extension for unspliced RNA
  ☆16Updated 2 months ago
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆28Updated last year
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆42Updated last year
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆24Updated 2 years ago
• YosefLab / mrvi_archive
  Multi-resolution Variational Inference
  ☆22Updated 3 months ago
• rargelaguet / thesis
  University of Cambridge PhD thesis
  ☆15Updated 4 years ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆23Updated 2 years ago