jmschrei / dragonnfruitLinks
A method for analyzing scATAC-seq experiments.
☆33Updated last month
Alternatives and similar repositories for dragonnfruit
Users that are interested in dragonnfruit are comparing it to the libraries listed below
Sorting:
- A python package for chromVAR☆28Updated 2 years ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆43Updated this week
- Geometry-preserving random sampling☆89Updated 9 months ago
- ☆35Updated 10 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 6 months ago
- Benchmark of GRNs using the GRETA pipeline☆26Updated this week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated 3 weeks ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- pseudobulking on an AnnData object☆32Updated 4 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated 2 months ago
- ☆26Updated 3 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆53Updated 11 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆70Updated last week
- Pipeline to run scE2G☆27Updated this week
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated 4 months ago
- Toolkit for single-cell DNA methylation analysis.☆42Updated last month
- ☆35Updated 4 months ago
- ☆55Updated last month
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated 8 months ago
- ☆30Updated 2 years ago
- Sanger Cellular Genetics single-cell ATAC-seq pipeline.☆12Updated last year
- Multi-resolution Variational Inference☆23Updated last month
- ☆67Updated 2 months ago
- An end-to-end computational pipeline for large Perturb-seq screens☆13Updated 3 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 years ago
- Single cell omics biology annotations☆51Updated 3 months ago
- ☆27Updated 4 months ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆90Updated last week
- Harmony framework for connecting scRNA-seq data from discrete time points☆50Updated last year