aertslab / PUMATAC
Pipeline for Universal Mapping of ATAC-seq
☆25Updated 10 months ago
Alternatives and similar repositories for PUMATAC:
Users that are interested in PUMATAC are comparing it to the libraries listed below
- ☆45Updated 7 months ago
- ☆16Updated last year
- Bead-based single-cell atac processing☆31Updated 3 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- ☆20Updated last year
- ☆30Updated last month
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆26Updated 3 years ago
- ☆29Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 8 months ago
- scover☆23Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- TF analysis from epigenetic and Hi-C data☆17Updated 2 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ☆16Updated 7 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆37Updated last year
- Benchmarking long-read RNA-seq analysis tools☆26Updated 2 weeks ago
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 3 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated 5 months ago
- simplified cellranger for long-read data☆18Updated 5 months ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 2 years ago
- Mapping pipeline for snmC-seq based technologies.☆17Updated last year