aertslab / PUMATAC
Pipeline for Universal Mapping of ATAC-seq
☆24Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for PUMATAC
- ☆40Updated 3 months ago
- ☆27Updated 3 months ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- scover☆22Updated last year
- ☆29Updated last year
- ☆20Updated last year
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated this week
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆32Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated 10 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 5 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year
- ☆15Updated 11 months ago
- ☆16Updated 4 months ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- ☆34Updated 6 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆24Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 weeks ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆23Updated last month
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆15Updated this week
- ☆30Updated 6 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 11 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 7 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- RNA velocity validation☆23Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆28Updated 3 years ago
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago