aertslab / PUMATACLinks
Pipeline for Universal Mapping of ATAC-seq
☆25Updated 3 months ago
Alternatives and similar repositories for PUMATAC
Users that are interested in PUMATAC are comparing it to the libraries listed below
Sorting:
- ☆19Updated 2 years ago
- ☆18Updated 2 years ago
- ☆20Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 7 months ago
- scover☆24Updated 2 years ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated 2 months ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 11 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 9 months ago
- ☆29Updated 2 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Updated 2 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- ☆53Updated last year
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- ☆32Updated 11 months ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- A collection of perl scripts for NGS analysis☆17Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- TF analysis from epigenetic and Hi-C data☆19Updated 9 months ago
- Molecular interactions inference from single-cell multi-omics data☆30Updated 2 months ago
- binned motif enrichment analysis and visualisation☆43Updated 2 months ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆19Updated last year
- ☆19Updated 5 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆28Updated 3 years ago
- Paired Insertion Counting for snATAC-seq data☆17Updated 7 months ago
- ☆23Updated last year