PASTA (Practical Alignment using SATe and Transitivity)
☆96Jun 5, 2025Updated last year
Alternatives and similar repositories for pasta
Users that are interested in pasta are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ensemble of HMM methods (SEPP, TIPP, UPP)☆95Aug 11, 2025Updated 10 months ago
- Accurate Species TRee ALgorithm☆279Apr 1, 2024Updated 2 years ago
- Fast, accurate species tree estimation.☆13Aug 29, 2024Updated last year
- que paquete☆10Jul 17, 2024Updated last year
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Jun 10, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Graph Clustering Merger☆36Mar 25, 2024Updated 2 years ago
- k-mer similarity analysis pipeline☆23Apr 30, 2026Updated last month
- ☆22Updated this week
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated 2 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆11Dec 7, 2022Updated 3 years ago
- A tool for divide-and-conquer tree estimation via a shared distance matrix☆10Mar 19, 2019Updated 7 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- ☆38Apr 13, 2026Updated 2 months ago
- Calculate summary statistics and manipulate multiple sequence alignments☆98Jan 28, 2026Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆30Mar 5, 2018Updated 8 years ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago
- Topology weighting by iterative sampling of sub-trees☆89Jan 5, 2025Updated last year
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆263Updated this week
- ☆19Dec 5, 2020Updated 5 years ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆469Jun 17, 2026Updated last week
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆34Jun 1, 2022Updated 4 years ago
- Feature Frequency Profile(FFP) two core programs☆13Apr 3, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated 2 years ago
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Jun 20, 2020Updated 6 years ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆10Aug 28, 2018Updated 7 years ago
- paprica - PAthway PRediction by phylogenetIC plAcement☆32Jun 2, 2026Updated 3 weeks ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated 2 years ago
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆236May 20, 2026Updated last month
- ☆45Oct 29, 2022Updated 3 years ago
- SimPhy: A comprehensive simulator of gene family evolution☆36Jun 30, 2023Updated 2 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆49May 30, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- Tutorials and materials for planning a HybSeq project, processing sequences, and conducting phylogenomic analyses.☆16May 19, 2017Updated 9 years ago
- PHAST☆87Updated this week
- Automated de novo assembly of whole chloroplast genomes.☆48Sep 23, 2024Updated last year
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 9 months ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago