smirarab / pastaLinks
PASTA (Practical Alignment using SATe and Transitivity)
☆93Updated 3 months ago
Alternatives and similar repositories for pasta
Users that are interested in pasta are comparing it to the libraries listed below
Sorting:
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 3 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆128Updated last year
- Calculate summary statistics and manipulate multiple sequence alignments☆85Updated last year
- Best-fit model selection☆82Updated last year
- An imagemagick-like frontend to Biopython SeqIO☆116Updated last year
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆79Updated last month
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆68Updated 4 years ago
- Ensemble of HMM methods (SEPP, TIPP, UPP)☆92Updated last month
- Efficient phylogenetic clustering of viral sequences☆89Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆119Updated last week
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆60Updated 6 years ago
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆83Updated 7 years ago
- Collection of scripts for bacterial genomics☆48Updated 5 years ago
- ☆131Updated last year
- Interactive quality assessment of genome assemblies☆107Updated 4 months ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 3 months ago
- A variational framework for inferring population structure from SNP genotype data.☆142Updated 2 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- Scripts and libraries for Environmental Genomics☆38Updated 7 months ago
- Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/☆80Updated 5 years ago
- Assembly statistic visualisation☆90Updated last year
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- Antibiotic resistance prediction in minutes☆111Updated 9 months ago
- ☆72Updated 3 months ago
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆41Updated last year
- shell tools for processing phylogenetic trees☆114Updated 3 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆130Updated last year
- A toolkit for analyzing and visualizing phylogenetic placement data☆62Updated 7 months ago