mossmatters / MJPythonNotebooks
Visualizing gene tree conflict using Phyparts, and ETE3
☆13Updated last year
Related projects ⓘ
Alternatives and complementary repositories for MJPythonNotebooks
- ☆21Updated 10 years ago
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm☆16Updated last year
- Code for computing various support scores for internodes☆18Updated 4 years ago
- ASTRAL for PaRalogs and Orthologs☆19Updated 2 years ago
- ☆16Updated 3 years ago
- spruceup☆20Updated 2 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆43Updated 4 years ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Updated 3 weeks ago
- ☆38Updated last year
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆30Updated 8 months ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆10Updated 10 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 4 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆32Updated last year
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆11Updated 4 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆41Updated 8 months ago
- Genome-wide de novo genotyping with 2bRAD☆21Updated 2 weeks ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆44Updated last month
- ☆10Updated 8 months ago
- R package for analysis of hybrids and hybrid zones☆18Updated 10 months ago
- Alignment-Based Sequence extraction☆14Updated 2 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆16Updated 8 months ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆19Updated 3 years ago
- This repository contains the code and manual for the R package delimitR.☆16Updated 2 years ago
- ☆13Updated 3 years ago
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆11Updated last year
- ContScout sequence contamination filter tool☆15Updated 3 weeks ago
- Scripts for population genetics analysis☆19Updated 2 years ago
- Workflow to detect and phase hybrids in target capture data☆17Updated last year
- ☆12Updated 6 months ago