mossmatters / MJPythonNotebooks
Visualizing gene tree conflict using Phyparts, and ETE3
☆14Updated last year
Alternatives and similar repositories for MJPythonNotebooks:
Users that are interested in MJPythonNotebooks are comparing it to the libraries listed below
- ☆17Updated 4 years ago
- ☆21Updated 10 years ago
- ASTRAL for PaRalogs and Orthologs☆21Updated 2 years ago
- Code for computing various support scores for internodes☆19Updated 4 years ago
- ☆38Updated last year
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆46Updated 11 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 4 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆16Updated 11 months ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆33Updated 11 months ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆15Updated 4 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm☆18Updated 2 years ago
- ☆17Updated 5 months ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆21Updated 2 years ago
- Workflow to detect and phase hybrids in target capture data☆18Updated last year
- Helper scripts for processing and visualization of phylogenetics datasets☆27Updated last year
- spruceup☆24Updated 6 months ago
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆11Updated 5 years ago
- This repository contains the code and manual for the R package delimitR.☆17Updated 2 years ago
- Calculate Hybrid Index and Heterozygosity from SNP data☆10Updated 2 months ago
- ☆14Updated 3 years ago
- Automatic evaluation of HGTs☆26Updated 2 weeks ago
- Package for species delimitation analysis☆10Updated last month
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆10Updated 10 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆14Updated last month
- ☆18Updated last year
- Scripts for population genetics analysis☆19Updated 2 years ago