hahnlab / CAFELinks
Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
☆117Updated 4 years ago
Alternatives and similar repositories for CAFE
Users that are interested in CAFE are comparing it to the libraries listed below
Sorting:
- Version 5 of the CAFE phylogenetics software☆147Updated 7 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆128Updated 10 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆209Updated last year
- ☆216Updated 7 months ago
- Get assembly statistics from FASTA and FASTQ files☆123Updated 2 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆204Updated last year
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆177Updated 4 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆207Updated 2 months ago
- Any Way to Show Multi genomic Synteny☆201Updated 2 months ago
- A library for running k-mers based GWAS☆115Updated 10 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆178Updated 11 months ago
- A genome completeness evaluation tool based on miniprot☆219Updated this week
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆98Updated 7 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆109Updated 2 weeks ago
- source code for EVM☆117Updated 9 months ago
- PASA software☆193Updated 7 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆107Updated last month
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆191Updated last year
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆159Updated 2 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆185Updated 4 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆206Updated 2 years ago
- Fast and accurately polish the genome generated by long reads.☆234Updated 8 months ago
- SMC++ infers population history from whole-genome sequence data.☆167Updated last year
- Nanopore data assembler☆161Updated 3 years ago
- MITObim - mitochondrial baiting and iterative mapping☆114Updated 4 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆218Updated last year
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆146Updated 8 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆192Updated 3 months ago