hahnlab / CAFELinks
Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
☆119Updated 4 years ago
Alternatives and similar repositories for CAFE
Users that are interested in CAFE are comparing it to the libraries listed below
Sorting:
- Version 5 of the CAFE phylogenetics software☆159Updated 11 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆120Updated 2 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated 2 years ago
- A library for running k-mers based GWAS☆125Updated last year
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆134Updated last year
- ☆232Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆215Updated 7 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆124Updated last week
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆112Updated 5 months ago
- BSR-Based Allele Calling Algorithm☆147Updated this week
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆183Updated 2 months ago
- Get assembly statistics from FASTA and FASTQ files☆124Updated 2 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆146Updated 6 months ago
- Any Way to Show Multi genomic Synteny☆217Updated 7 months ago
- Pan-genome wide association studies☆207Updated last year
- Fast and accurately polish the genome generated by long reads.☆240Updated last year
- Convert various sequence formats to FASTA☆147Updated last month
- Nanopore data assembler☆165Updated 3 years ago
- A genome completeness evaluation tool based on miniprot☆233Updated 4 months ago
- A tool to circularize genome assemblies☆252Updated last year
- source code for EVM☆122Updated last year
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Updated 4 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆158Updated 7 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆117Updated 6 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 6 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆191Updated 8 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆151Updated last month