hahnlab / CAFELinks
Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
☆118Updated 4 years ago
Alternatives and similar repositories for CAFE
Users that are interested in CAFE are comparing it to the libraries listed below
Sorting:
- Version 5 of the CAFE phylogenetics software☆155Updated 9 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆119Updated 2 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆133Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- A library for running k-mers based GWAS☆122Updated last year
- ☆222Updated 10 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated 3 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Updated 5 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆100Updated 3 weeks ago
- Any Way to Show Multi genomic Synteny☆213Updated 5 months ago
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆178Updated 3 weeks ago
- Get assembly statistics from FASTA and FASTQ files☆124Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174Updated 4 years ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆182Updated last month
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆121Updated last week
- source code for EVM☆119Updated last year
- Foreign Contamination Screening caller scripts and documentation☆151Updated 8 months ago
- Reference-free profiling of polyploid genomes☆136Updated 2 months ago
- A genome completeness evaluation tool based on miniprot☆230Updated 2 months ago
- Fast and accurately polish the genome generated by long reads.☆238Updated 11 months ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆148Updated last month
- Nanopore data assembler☆162Updated 3 years ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆139Updated 2 years ago
- MITObim - mitochondrial baiting and iterative mapping☆114Updated 4 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆145Updated 5 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Updated 3 years ago
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆190Updated 7 months ago