hahnlab / CAFE
Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
☆116Updated 3 years ago
Alternatives and similar repositories for CAFE:
Users that are interested in CAFE are comparing it to the libraries listed below
- Version 5 of the CAFE phylogenetics software☆128Updated last month
- Any Way to Show Multi genomic Synteny☆176Updated 4 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆197Updated last year
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆111Updated last year
- ☆199Updated last month
- ☆75Updated 8 months ago
- Metatranscriptomics Tutorial☆62Updated last year
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆121Updated 4 months ago
- Fast and accurately polish the genome generated by long reads.☆219Updated 2 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆197Updated 3 weeks ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆176Updated 2 weeks ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆91Updated last month
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆113Updated 2 weeks ago
- Nanopore data assembler☆145Updated 2 years ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆159Updated this week
- A pipeline used to identify different modes of duplicated gene pairs☆97Updated last week
- A library for running k-mers based GWAS☆107Updated 4 months ago
- SMC++ infers population history from whole-genome sequence data.☆161Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆300Updated last month
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆134Updated 2 months ago
- A genome completeness evaluation tool based on miniprot☆194Updated last week
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆174Updated 5 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆197Updated 6 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆97Updated 11 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- Genome Assembly and Annotation Service code☆209Updated last year
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆140Updated 4 months ago
- PASA software☆184Updated last month
- ☆177Updated last month