Alternatives and similar repositories for BS-Snper:

Users that are interested in BS-Snper are comparing it to the libraries listed below

• AndreasHeger / gat
  Genomic Association Tester
  ☆30Updated last year
• ChrisMaherLab / ClonEvol
  ☆13Updated 7 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆38Updated 3 years ago
• databio / pepatac
  A modular, containerized pipeline for ATAC-seq data processing
  ☆55Updated last week
• khuang28jhu / bs3
  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
  ☆27Updated 5 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆22Updated last year
• kundajelab / ataqc
  ☆17Updated 6 years ago
• marvin-jens / find_circ
  tools to find circRNAs in RNA-seq data
  ☆42Updated 7 years ago
• SGDDNB / translational_regulation
  Detection of differential translated genes using Ribo-seq
  ☆15Updated 3 years ago
• pdiakumis / rock
  Rocking R at UMCCR
  ☆9Updated 4 years ago
• xuzhougeng / RNA-seq-downstream-analysis
  Arabidopsis RNA_-seq downstream analysis shiny app
  ☆31Updated 5 years ago
• hms-dbmi / spp
  SPP - R package for analysis of ChIP-seq and other functional sequencing data
  ☆40Updated 3 years ago
• mskcc / lohhla
  Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs
  ☆30Updated last year
• dnaase / Bis-tools
  A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…
  ☆31Updated 3 years ago
• rvolden / Mandalorion-Episode-II
  Version II of Mandalorion
  ☆32Updated 6 years ago
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆32Updated 2 years ago
• gxiaolab / REDITs
  RNA editing tests
  ☆16Updated 4 years ago
• asntech / QDNAseq.hg38
  QDNAseq bin annotation for hg38
  ☆14Updated 2 years ago
• deLaatLab / pipe4C
  4C-seq processing pipeline
  ☆23Updated 10 months ago
• nloyfer / UXM_deconv
  ☆40Updated 2 years ago
• ENCODE-DCC / dna-me-pipeline
  DCC/DAC methylation pipeline source
  ☆55Updated 4 years ago
• saketkc / rna-seq-snakemake
  Snakemake based pipeline for RNA-Seq analysis
  ☆31Updated 5 years ago
• cancerit / ClusterSV
  SV clustering
  ☆28Updated 3 years ago
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆20Updated last year
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆62Updated last year
• nskvir / RepEnrich
  RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆27Updated 3 years ago
• vivekbhr / Subread_to_DEXSeq
  Scripts to import your FeatureCounts output into DEXSeq
  ☆32Updated 6 years ago
• jxzb1988 / MMQTL
  MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…
  ☆11Updated 3 years ago
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆26Updated 2 years ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated this week