databio / MIRALinks
R package for Methylation-based Inference of Regulatory Activity
☆13Updated 5 years ago
Alternatives and similar repositories for MIRA
Users that are interested in MIRA are comparing it to the libraries listed below
Sorting:
- ☆39Updated 4 years ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Updated 7 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 2 months ago
- A program for summarising CpG methylation patterns☆20Updated 9 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆33Updated 3 months ago
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Single-cell Bisulfite Sequencing Data Mapping☆12Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- Mapped QC analysis program☆44Updated 7 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Transcript assembly tool using multiple change-point inference to improve 3'UTR annotation☆13Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- ☆13Updated 8 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago