databio / MIRA
R package for Methylation-based Inference of Regulatory Activity
☆12Updated 5 years ago
Alternatives and similar repositories for MIRA:
Users that are interested in MIRA are comparing it to the libraries listed below
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago
- A program for summarising CpG methylation patterns☆20Updated 8 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 8 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Transcript assembly tool using multiple change-point inference to improve 3'UTR annotation☆13Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Genomic Association Tester☆31Updated last year
- Enriched Domain Detector for ChIP-seq data☆16Updated 2 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 8 years ago
- allele specific DNA methylation haplotype region☆14Updated last year
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Updated 7 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 7 months ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- An interactive Shiny web application for genomic interval enrichment analysis using LOLA.☆16Updated 2 years ago