bjpop / methpatLinks
A program for summarising CpG methylation patterns
☆20Updated 8 years ago
Alternatives and similar repositories for methpat
Users that are interested in methpat are comparing it to the libraries listed below
Sorting:
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- ☆22Updated 6 months ago
- Third-generation fusion gene detection☆14Updated last year
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated 3 weeks ago
- Genomic Association Tester☆31Updated 2 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Adapters for trimming☆30Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- ☆21Updated last year
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- allele specific DNA methylation haplotype region☆14Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 9 months ago
- Personal diploid genome creation and coordinate conversion☆29Updated 2 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated last week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- R package for DNA methylation analysis☆18Updated 10 months ago
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- QDNAseq bin annotation for hg38☆15Updated 2 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 11 months ago
- ☆51Updated 5 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ☆14Updated 7 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago