bjpop / methpatLinks
A program for summarising CpG methylation patterns
☆20Updated 8 years ago
Alternatives and similar repositories for methpat
Users that are interested in methpat are comparing it to the libraries listed below
Sorting:
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- BISulfite-seq CUI Toolkit☆19Updated 3 weeks ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- ☆22Updated 5 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 3 weeks ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Genomic Association Tester☆31Updated 2 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- QDNAseq bin annotation for hg38☆15Updated 2 months ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 8 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- allele specific DNA methylation haplotype region☆14Updated last year
- Personal diploid genome creation and coordinate conversion☆26Updated 2 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- ☆24Updated 9 months ago
- R package for DNA methylation analysis☆18Updated 9 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated last week
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- ☆36Updated 2 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago