bjpop / methpat
A program for summarising CpG methylation patterns
☆19Updated 8 years ago
Alternatives and similar repositories for methpat:
Users that are interested in methpat are comparing it to the libraries listed below
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Genomic Association Tester☆30Updated last year
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- ☆21Updated 2 months ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Reconstruction of focal amplifications with long reads☆18Updated this week
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Adapters for trimming☆30Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- fastx-utils using klib☆18Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- processing 10x genomics reads☆24Updated 5 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 4 months ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- Indel caller for DNA-seq or RNA-seq☆14Updated last year
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago