An R for fast and flexible DNA methylation analysis
☆35Dec 9, 2025Updated 3 months ago
Alternatives and similar repositories for methrix
Users that are interested in methrix are comparing it to the libraries listed below
Sorting:
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆36May 28, 2025Updated 9 months ago
- Cell Heterogeneity Accounted cLonal Methylation (CHALM)☆10Jul 6, 2021Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- Updated and optimized fork of BSMAP☆24Dec 28, 2020Updated 5 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆54Mar 12, 2026Updated last week
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Figure depicting the breadth of multimodal scRNA-seq technologies☆16Apr 3, 2019Updated 6 years ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆20Nov 19, 2020Updated 5 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Jan 28, 2022Updated 4 years ago
- Devel repository for bsseq☆39Feb 6, 2026Updated last month
- Tools for analyzing DNA methylation data☆44Feb 15, 2026Updated last month
- R package for DNA methylation analysis☆249Jan 18, 2026Updated 2 months ago
- Decomposition of heterogeneous DNA methylomes☆23Jul 10, 2024Updated last year
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆62May 9, 2025Updated 10 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Oct 7, 2022Updated 3 years ago
- Function Enrichment analysis and Network construction☆14Dec 10, 2025Updated 3 months ago
- Analyzing chromatin accessibility data in R☆18Jun 23, 2023Updated 2 years ago
- An efficient genetic data imputation pipeline☆12Apr 7, 2022Updated 3 years ago
- Generate IGV style locus tracks from bigWig files in R☆183Oct 28, 2024Updated last year
- Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within d…☆25Feb 4, 2026Updated last month
- DCC/DAC methylation pipeline source☆56Jul 29, 2020Updated 5 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Jul 18, 2025Updated 8 months ago
- Higher level repo for aggregating all of Atlas workflow logic for Single Cell☆14Mar 3, 2026Updated 2 weeks ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Feb 9, 2026Updated last month
- Simplify functional enrichment results☆124Jan 30, 2026Updated last month
- BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data☆14Jan 3, 2023Updated 3 years ago
- RNA-Seq normalization and quantification pipeline☆12Nov 25, 2024Updated last year
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆445Aug 8, 2025Updated 7 months ago
- Send R code/R scripts/shell commands to LSF cluster without leaving R☆26Mar 14, 2025Updated last year
- A preprocessing and QC pipeline for HiChIP data☆40Jul 11, 2022Updated 3 years ago
- Impute DNA methylation from WGBS data.☆11Apr 23, 2019Updated 6 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆158Aug 8, 2025Updated 7 months ago
- ☆12Oct 31, 2020Updated 5 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Dec 17, 2025Updated 3 months ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆42Aug 21, 2025Updated 6 months ago
- Demonstration of the use of an R package to organize a data analysis project☆22Mar 30, 2020Updated 5 years ago
- Predicting regulatory DNA elements based on epigenomic signatures☆30Jun 26, 2024Updated last year
- Python OncoPrint library based on Matplotlib☆25Sep 23, 2025Updated 5 months ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 6 years ago