shenkers / isoscmLinks
Transcript assembly tool using multiple change-point inference to improve 3'UTR annotation
☆13Updated 2 years ago
Alternatives and similar repositories for isoscm
Users that are interested in isoscm are comparing it to the libraries listed below
Sorting:
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- ☆13Updated 7 years ago
- R package for Methylation-based Inference of Regulatory Activity☆13Updated 5 years ago
- Single-cell Bisulfite Sequencing Data Mapping☆12Updated 4 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 3 weeks ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆22Updated 5 months ago
- A program for summarising CpG methylation patterns☆20Updated 8 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 9 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- a set of NGS pipelines☆24Updated last week
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- R package for DNA methylation analysis☆18Updated 9 months ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- ☆12Updated 5 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- ☆18Updated 6 years ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 8 years ago
- DriverPower☆26Updated 4 months ago
- ☆24Updated 10 months ago
- chia pet analysis software☆25Updated 6 years ago
- Filter and prioritize fusion calls☆20Updated 8 months ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- ☆8Updated 7 years ago