StantonLabDartmouth / AppScanGEO
Source code for ScanGEO Shiny App
☆15Updated 2 years ago
Alternatives and similar repositories for AppScanGEO:
Users that are interested in AppScanGEO are comparing it to the libraries listed below
- Molecular Signatures Database (MSigDB) in a data frame☆17Updated 6 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Gene-level general linear mixed model☆20Updated 2 months ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated 3 weeks ago
- Repository for supplemental material of manuscripts☆18Updated 3 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆20Updated 3 weeks ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 4 months ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated last year
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 7 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 3 months ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 4 months ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- R package for plotting 3D graphical visualization of multi-omics data.☆22Updated 3 years ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆22Updated last month
- Sample code for ldsc analyses in UKBB☆30Updated last year
- From IDAT to beta.☆25Updated 6 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆31Updated 3 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 9 months ago
- Archived version of RUVSeq☆8Updated 7 years ago
- ☆10Updated 5 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated last year
- Core utilities for single-cell RNA-seq☆12Updated 3 months ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆18Updated 5 years ago