StantonLabDartmouth / AppScanGEOLinks
Source code for ScanGEO Shiny App
☆15Updated 3 years ago
Alternatives and similar repositories for AppScanGEO
Users that are interested in AppScanGEO are comparing it to the libraries listed below
Sorting:
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Updated 7 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 months ago
- Repository for supplemental material of manuscripts☆18Updated 4 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆31Updated last month
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- Gene-level general linear mixed model☆24Updated 3 months ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 2 months ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 3 years ago
- ☆10Updated 6 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Updated last month
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- Genomic plot in trellis layout☆42Updated last year
- A toolkit developed by JhuangLab members to facilitate the analysis of next-generation sequencing (NGS) data.☆19Updated 7 years ago
- From IDAT to beta.☆25Updated 7 years ago
- An R package to plot interactive three-way differential expression analysis☆38Updated last week
- Machine learning use cases for teaching☆13Updated 8 years ago
- Interactive benchmarking of ranking and assignment methods☆16Updated last month
- countsimQC - Compare characteristic features of count data sets☆29Updated 2 months ago
- R package for plotting 3D graphical visualization of multi-omics data.☆24Updated 3 years ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated last year
- Differential Correlation across Ranked Samples☆12Updated 2 years ago
- Integrating zingeR with ZINB-WaVE weights☆25Updated 7 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated 2 years ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21Updated 7 months ago
- An open-source R package for omics data integrative analysis in terms of network, evolution and ontology☆18Updated 2 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆14Updated 2 months ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆21Updated 4 months ago