Alternatives and similar repositories for AppScanGEO:

Users that are interested in AppScanGEO are comparing it to the libraries listed below

• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated 2 years ago
• markziemann / mitch
  An R package for multi-dimensional pathway enrichment analysis
  ☆16Updated last week
• stephenturner / msigdf
  Molecular Signatures Database (MSigDB) in a data frame
  ☆17Updated 6 years ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆31Updated last year
• boutroslab / Supplemental-Material
  Repository for supplemental material of manuscripts
  ☆18Updated 3 years ago
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated last week
• kharchenkolab / sccore
  Core utilities for single-cell RNA-seq
  ☆12Updated last week
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆21Updated 3 months ago
• uc-bd2k / GREP2
  GEO RNA-seq Experiments Processing Pipeline
  ☆21Updated 5 years ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated last week
• mkanai / grimon
  R package for plotting 3D graphical visualization of multi-omics data.
  ☆22Updated 3 years ago
• unistbig / netGO
  R/Shiny package for network-integrated pathway enrichment analysis
  ☆14Updated 4 years ago
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆29Updated last month
• statOmics / zingeR
  zero-inflated negative binomial gene expression in R
  ☆20Updated 7 years ago
• laurenhsu1 / corral
  Dimensionality reduction and batch integration methods for single cell data
  ☆16Updated 2 years ago
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆20Updated 9 months ago
• lgeistlinger / EnrichmentBrowser
  Seamless navigation through combined results of set-based and network-based enrichment analysis
  ☆20Updated last month
• lianos / multiGSEA
  NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …
  ☆21Updated 4 years ago
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆23Updated 4 years ago
• AlexandrovLab / SigProfilerMatrixGeneratorR
  R wrapper for utilizing the SigProfilerMatrixGenerator framework
  ☆20Updated 2 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated 10 months ago
• qingjian1991 / MPTevol
  ☆10Updated 2 years ago
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆18Updated 3 months ago
• Accio / KEGGgraph
  The KEGGgraph package to parse KEGG pathways in R into graph objects
  ☆13Updated last week
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated 2 years ago
• churchill-lab / scBASE
  A set of tools for accurate quantitation of single-cell allele-specific expression
  ☆12Updated 2 years ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 7 years ago
• drisso / archive-RUVSeq
  Archived version of RUVSeq
  ☆8Updated 8 years ago
• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆16Updated last week