StantonLabDartmouth / AppScanGEOLinks
Source code for ScanGEO Shiny App
☆15Updated 3 years ago
Alternatives and similar repositories for AppScanGEO
Users that are interested in AppScanGEO are comparing it to the libraries listed below
Sorting:
- Molecular Signatures Database (MSigDB) in a data frame☆16Updated 6 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆43Updated last month
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- R package for benchmarking single cell analysis methods☆32Updated last year
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆30Updated 4 months ago
- Gene-level general linear mixed model☆22Updated 8 months ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated 3 months ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- From IDAT to beta.☆25Updated 7 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Repository for supplemental material of manuscripts☆18Updated 4 years ago
- An open-source R package for omics data integrative analysis in terms of network, evolution and ontology☆18Updated last year
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- countsimQC - Compare characteristic features of count data sets☆29Updated 2 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 years ago
- Differential Correlation across Ranked Samples☆12Updated 2 years ago
- R package for plotting 3D graphical visualization of multi-omics data.☆23Updated 3 years ago
- An R package to plot interactive three-way differential expression analysis☆38Updated 2 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 5 months ago
- Decomposition of heterogeneous DNA methylomes☆23Updated last year
- Toolbox package for organizing and working with TCGA data☆28Updated 2 months ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆14Updated 4 months ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 9 months ago
- ☆10Updated 6 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 10 months ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆31Updated 3 years ago
- ☆10Updated 2 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago