Alternatives and similar repositories for glint:

Users that are interested in glint are comparing it to the libraries listed below

• biobenkj / compartmap
  Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq
  ☆13Updated last year
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆56Updated 2 months ago
• sjczheng / EpiDISH
  This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…
  ☆47Updated 2 months ago
• icbi-lab / Immunophenogram
  ☆40Updated 6 years ago
• sirselim / illumina450k_filtering
  A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
  ☆30Updated last year
• mskilab-org / fishHook
  R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after cor…
  ☆27Updated 2 years ago
• kundajelab / ataqc
  ☆17Updated 6 years ago
• UMCUGenetics / CHORD
  An R package for predicting HR deficiency from mutation contexts
  ☆27Updated last year
• seasoncloud / Alleloscope
  Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…
  ☆29Updated last year
• rcavalcante / annotatr
  Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…
  ☆26Updated 5 months ago
• parklab / SigMA
  Mutational signature analysis for low statistics SNV data
  ☆63Updated 5 months ago
• mskcc / mutation-signatures
  Create mutation signatures from MAF's, and decompose them into Stratton signatures
  ☆60Updated 5 years ago
• caravagnalab / mobster
  Model-based subclonal deconvolution from bulk sequencing.
  ☆33Updated 3 weeks ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆39Updated last year
• foreverdream2 / dysfunction_interaction_test
  ☆29Updated 6 years ago
• lanagarmire / SSrGE
  ☆33Updated 5 years ago
• cozygene / TCA
  ☆17Updated 3 years ago
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆27Updated 2 years ago
• mdozmorov / gwas2bed
  Extracting disease-specific genomic coordinates from GWAS catalog
  ☆19Updated 5 years ago
• mskcc / facets-suite
  Utility functions for FACETS
  ☆34Updated 9 months ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆42Updated last year
• Papatheodorou-Group / CATD_snakemake
  Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…
  ☆15Updated 5 months ago
• morrislab / TrackSig
  A framework to infer mutational signatures in cancer over time
  ☆53Updated 5 years ago
• FunGeST / Palimpsest
  An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
  ☆70Updated 7 months ago
• BaderLab / HumanLiver
  R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations
  ☆27Updated 4 years ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆53Updated 3 years ago
• ChrisMaherLab / ClonEvol
  ☆13Updated 7 years ago
• ding-lab / PanCanAtlasGermline
  ☆43Updated 6 years ago
• jdekanter / CHETAH
  scRNA-seq cell type identification
  ☆44Updated 5 years ago
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆31Updated 3 years ago