rifathamoudi / COMETgazerLinks
COMETgazer mehylation analysis software suite
☆10Updated 6 years ago
Alternatives and similar repositories for COMETgazer
Users that are interested in COMETgazer are comparing it to the libraries listed below
Sorting:
- ☆12Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- DriverPower☆26Updated 8 months ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated 2 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Updated 11 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last week
- ☆17Updated last year
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated last week
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 9 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- Visualization tool for temporal clonal evolution.☆17Updated 5 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- mitochondrial variant analysis tools☆15Updated 4 years ago
- R package for Methylation-based Inference of Regulatory Activity☆13Updated 5 years ago
- ☆16Updated last year
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- ☆14Updated last month
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last week
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago