Alternatives and similar repositories for MeDeCom:

Users that are interested in MeDeCom are comparing it to the libraries listed below

• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆31Updated last year
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• edsgard / scphaser
  R package for haplotype phasing using single-cell RNA-seq data
  ☆13Updated 7 years ago
• WT215 / bayNorm
  Normalization for single cell RNA-seq data
  ☆9Updated 2 years ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆17Updated 2 years ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated 10 months ago
• corbinq / apex
  Toolkit for QTL mapping and meta-analysis.
  ☆16Updated 2 years ago
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 2 years ago
• single-cell-genetics / singlecell_neuroseq_paper
  Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
  ☆21Updated 9 months ago
• HelenaLC / muscat-comparison
  ☆12Updated 11 months ago
• kieranrcampbell / phenopath
  Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds
  ☆10Updated 6 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated 8 months ago
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆28Updated 4 years ago
• markziemann / mitch
  An R package for multi-dimensional pathway enrichment analysis
  ☆16Updated this week
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆17Updated 3 years ago
• tengfei-emory / scBatch
  Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment
  ☆17Updated 3 years ago
• MonashBioinformaticsPlatform / celaref
  ☆14Updated 5 years ago
• stephaniehicks / scBatchPaper
  Code used for the single-cell RNA-Seq batch effects paper
  ☆10Updated 7 years ago
• SimoneTiberi / distinct
  distinct: a method for differential analyses via hierarchical permutation tests
  ☆11Updated last year
• caravagnalab / CNAqc
  CNAqc - Copy Number Alteration (CNA) Quality Check package
  ☆21Updated last month
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 5 years ago
• MarioniLab / geneBasisR
  R package for gene selection using k-NN graphs.
  ☆13Updated last year
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• mm-shah / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆13Updated 5 years ago
• kkdey / CountClust
  A R package for Grade of Membership model and Visualization of counts data:
  ☆31Updated 4 years ago
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 4 years ago
• cozygene / TCA
  ☆18Updated 4 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated 2 years ago
• stephaniehicks / spatialexperiment-analysis
  repo to explore spatial data in R/Bioconductor and Python
  ☆12Updated 5 years ago
• cz-ye / DECENT
  Differential Expression with Capture Efficiency adjustmeNT
  ☆14Updated 2 years ago