CompEpigen / MeDeComLinks
Decomposition of heterogeneous DNA methylomes
☆23Updated last year
Alternatives and similar repositories for MeDeCom
Users that are interested in MeDeCom are comparing it to the libraries listed below
Sorting:
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 11 months ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated last week
- A Julia package for extracting mutation signatures using topic models☆19Updated 3 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Updated 2 years ago
- Pairwise Hierarchical Model☆20Updated 3 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆11Updated 6 years ago
- Repository for supplemental material of manuscripts☆18Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- An R for fast and flexible DNA methylation analysis☆35Updated last week
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- Code for EpiMap data browser☆14Updated last year
- ☆14Updated 6 years ago
- Evolutionary frequency visualization tool of temporal data☆23Updated 3 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 4 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 5 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Updated 4 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- S3norm ver2 + IDEAS epigenetic state / master peak list☆12Updated 2 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 7 months ago
- Mutational Signature Comprehensive Analysis Toolkit☆14Updated 3 months ago
- ☆12Updated last year
- ☆10Updated 6 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago