corbinq / apex
Toolkit for QTL mapping and meta-analysis.
☆16Updated 2 years ago
Alternatives and similar repositories for apex:
Users that are interested in apex are comparing it to the libraries listed below
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated last year
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 10 months ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 3 months ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 6 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- Independent Hypothesis Weighting☆15Updated last year
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 8 months ago
- Pairwise Hierarchical Model☆17Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- A tidy interface for coverage analysis☆24Updated 5 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Examples of kallisto + sleuth☆11Updated 7 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- Sample code for ldsc analyses in UKBB☆30Updated last year
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 10 months ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- ☆10Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- ☆13Updated 2 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 2 weeks ago
- software package for integrative genetic association analysis☆34Updated last year
- Get SNP proxies from the 1000 Genomes Project.☆28Updated 6 years ago