hhg7 / defiantLinks
Differential methylation: Easy, Fast, Identification and ANnoTation
☆19Updated 4 years ago
Alternatives and similar repositories for defiant
Users that are interested in defiant are comparing it to the libraries listed below
Sorting:
- Differential ATAC-seq toolkit☆27Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- R package for Methylation-based Inference of Regulatory Activity☆13Updated 5 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- A/B compartments for 12 cancer types estimated from TCGA methylation data☆20Updated 8 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- An R package to interpret biological trends from DNA methylation data☆17Updated 3 years ago
- ☆18Updated 6 years ago
- An R for fast and flexible DNA methylation analysis☆31Updated this week
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆20Updated 4 years ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 8 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Updated 6 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Identify cell types and pathways affected by genetic risk loci.☆37Updated last year
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- ☆8Updated 7 years ago