itmat / rumView external linksLinks
RNA-Seq Unified Mapper
☆27Sep 9, 2022Updated 3 years ago
Alternatives and similar repositories for rum
Users that are interested in rum are comparing it to the libraries listed below
Sorting:
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Jan 19, 2021Updated 5 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Jan 6, 2026Updated last month
- Estimation of pairwise distances under a probabilistic framework☆11Aug 11, 2023Updated 2 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- Applying IDR analysis to Homer peaks.☆15May 8, 2020Updated 5 years ago
- NGS perl modules☆11Feb 4, 2026Updated last week
- mrsFAST: micro-read substitution-only Fast Alignment Search Tool☆28Sep 22, 2020Updated 5 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 3 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 9 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Oct 8, 2021Updated 4 years ago
- gvcf aggregation tool☆12Feb 7, 2018Updated 8 years ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 6 years ago
- An application to remove PCR duplicates from high throughput sequencing runs.☆11Apr 22, 2018Updated 7 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 3 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 3 years ago
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 6 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- ☆12Jan 21, 2016Updated 10 years ago
- Tools for querying and analysis of genomic data☆27Oct 26, 2025Updated 3 months ago
- An interactive Shiny web application for genomic interval enrichment analysis using LOLA.☆16Apr 17, 2022Updated 3 years ago
- R package for Methylation-based Inference of Regulatory Activity☆13Apr 9, 2020Updated 5 years ago
- DeeNA Zip (SAM/BAM compression tool)☆13May 25, 2019Updated 6 years ago
- Transcript assembly tool using multiple change-point inference to improve 3'UTR annotation☆13Dec 2, 2022Updated 3 years ago
- ☆13Jan 8, 2020Updated 6 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 3 months ago
- ☆15Oct 19, 2023Updated 2 years ago
- Python wrapper around the popular ChIP-Seq peak caller SICER☆15Dec 7, 2017Updated 8 years ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated 5 months ago
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 8 years ago
- A Modern Perl Framework for High Throughput Sequencing analysis☆17May 6, 2020Updated 5 years ago
- example applications built using bíogo☆18Apr 19, 2021Updated 4 years ago
- Download binary executables and sample data here:☆18Oct 28, 2016Updated 9 years ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Aug 23, 2018Updated 7 years ago
- WALT is a read mapping program for bisulfite sequencing DNA methylation studies.☆17Aug 23, 2022Updated 3 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Jun 13, 2025Updated 8 months ago
- Cross-platform GUI desktop application for making biological heatmaps☆19Nov 10, 2022Updated 3 years ago
- Next generation sequencing (NGS/HTS) tools.☆19Jan 25, 2024Updated 2 years ago
- An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculatin…☆16Jul 20, 2018Updated 7 years ago