ZhouQiangwei / MethHaploLinks
allele specific DNA methylation haplotype region
☆13Updated last year
Alternatives and similar repositories for MethHaplo
Users that are interested in MethHaplo are comparing it to the libraries listed below
Sorting:
- ☆38Updated 4 years ago
- BISulfite-seq CUI Toolkit☆24Updated 3 weeks ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆41Updated 4 years ago
- ☆46Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- QDNAseq package for Bioconductor☆52Updated last year
- QDNAseq bin annotation for hg38☆16Updated 6 months ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago
- Genomic Association Tester☆32Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- Single-cell Bisulfite Sequencing Data Mapping☆12Updated 4 years ago
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- ☆26Updated last year
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- ☆21Updated 3 weeks ago
- RNA-seq workflow: differential transcript usage☆22Updated 2 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆64Updated last year
- ☆13Updated 8 years ago
- Tools for analyzing DNA methylation data☆43Updated this week
- A software for calculating telomere length☆71Updated 6 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 4 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 3 weeks ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆32Updated 3 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 4 months ago
- R package for DNA methylation analysis☆19Updated last year