Alternatives and similar repositories for MethHaplo:

Users that are interested in MethHaplo are comparing it to the libraries listed below

• ChrisMaherLab / ClonEvol
  ☆13Updated 7 years ago
• wupengomics / scBS-map
  Single-cell Bisulfite Sequencing Data Mapping
  ☆12Updated 3 years ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆33Updated 9 years ago
• cortes-ciriano-lab / ReConPlot
  ☆21Updated 4 months ago
• cphgeno / CNVbench
  Benchmarking of CNV calling tools
  ☆18Updated 5 years ago
• asntech / QDNAseq.hg38
  QDNAseq bin annotation for hg38
  ☆14Updated 2 weeks ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆31Updated last year
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆39Updated last year
• mskcc / lohhla
  Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs
  ☆30Updated last year
• khuang28jhu / bs3
  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
  ☆27Updated 5 years ago
• huishenlab / biscuit
  BISulfite-seq CUI Toolkit
  ☆19Updated 4 months ago
• dnaase / Bis-tools
  A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…
  ☆31Updated 3 years ago
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆21Updated last year
• chrisamiller / readDepth
  R package for inferring copy number from read depth
  ☆32Updated 2 years ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆49Updated 3 years ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆18Updated last month
• sartorlab / methylSig
  R package for DNA methylation analysis
  ☆18Updated 8 months ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 6 years ago
• mskcc / facets-suite
  Utility functions for FACETS
  ☆35Updated last year
• pdiakumis / rock
  Rocking R at UMCCR
  ☆9Updated 4 years ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 2 years ago
• bjpop / methpat
  A program for summarising CpG methylation patterns
  ☆20Updated 8 years ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 3 months ago
• abl0719 / ASElux
  ☆13Updated 5 years ago
• sdchandra / CNAclinic
  ☆23Updated 8 months ago
• wwylab / MuSE
  Somatic point mutation caller
  ☆28Updated 4 months ago
• cancer-genomics / reproduce_lucas_wflow
  ☆28Updated last year
• amcpherson / citup
  Clonality inference in multiple tumor samples using phylogeny
  ☆13Updated 7 years ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• adamewing / tebreak
  Find and characterise transposable element insertions
  ☆21Updated last year