ZhouQiangwei / MethHaploLinks
allele specific DNA methylation haplotype region
☆13Updated 2 years ago
Alternatives and similar repositories for MethHaplo
Users that are interested in MethHaplo are comparing it to the libraries listed below
Sorting:
- ☆38Updated 4 years ago
- BISulfite-seq CUI Toolkit☆25Updated 3 weeks ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 3 years ago
- QDNAseq.hg38: QDNAseq bin annotation for hg38☆17Updated 2 weeks ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆41Updated 4 years ago
- ☆26Updated last year
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- Tools for analyzing DNA methylation data☆44Updated last week
- QDNAseq package for Bioconductor☆53Updated last year
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- Genomic Association Tester☆35Updated 2 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- A software for calculating telomere length☆72Updated 7 years ago
- ☆49Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆66Updated last year
- TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data☆15Updated 6 years ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- Somatic point mutation caller☆32Updated 7 months ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 6 months ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago