Alternatives and similar repositories for MethHaplo:

Users that are interested in MethHaplo are comparing it to the libraries listed below

• wupengomics / scBS-map
  Single-cell Bisulfite Sequencing Data Mapping
  ☆12Updated 3 years ago
• ChrisMaherLab / ClonEvol
  ☆13Updated 7 years ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆31Updated 2 years ago
• asntech / QDNAseq.hg38
  QDNAseq bin annotation for hg38
  ☆14Updated last month
• cortes-ciriano-lab / ReConPlot
  ☆22Updated 4 months ago
• khuang28jhu / bs3
  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
  ☆27Updated 5 years ago
• huishenlab / biscuit
  BISulfite-seq CUI Toolkit
  ☆19Updated last week
• dnaase / Bis-tools
  A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…
  ☆31Updated 3 years ago
• sdchandra / CNAclinic
  ☆24Updated 9 months ago
• mskcc / facets-suite
  Utility functions for FACETS
  ☆35Updated last year
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆21Updated last year
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆49Updated 3 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆39Updated 3 years ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆33Updated 9 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆23Updated 2 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 2 months ago
• scottgigante / haplotyped-methylome
  Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation
  ☆23Updated 6 years ago
• yuchaojiang / CODEX2
  Full-spectrum copy number variation detection by high-throughput DNA sequencing
  ☆37Updated 3 years ago
• cphgeno / CNVbench
  Benchmarking of CNV calling tools
  ☆18Updated 5 years ago
• Xinglab / rMATS-long
  ☆28Updated 4 months ago
• SGDDNB / translational_regulation
  Detection of differential translated genes using Ribo-seq
  ☆15Updated 4 years ago
• abl0719 / ASElux
  ☆13Updated 5 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• sartorlab / methylSig
  R package for DNA methylation analysis
  ☆18Updated 8 months ago
• mskcc / lohhla
  Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs
  ☆30Updated last year
• shawnzhangyx / PePr
  a peak-calling and differential analysis tool for replicated ChIP-Seq data
  ☆37Updated 2 years ago
• dphansti / mango
  chia pet analysis software
  ☆25Updated 6 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 2 years ago
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆40Updated 2 weeks ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 2 years ago