ZhouQiangwei / MethHaploLinks
allele specific DNA methylation haplotype region
☆13Updated last year
Alternatives and similar repositories for MethHaplo
Users that are interested in MethHaplo are comparing it to the libraries listed below
Sorting:
- ☆38Updated 4 years ago
- BISulfite-seq CUI Toolkit☆24Updated 3 months ago
- QDNAseq bin annotation for hg38☆16Updated 4 months ago
- Genomic Association Tester☆31Updated 2 years ago
- Tools for analyzing DNA methylation data☆43Updated last week
- Single-cell Bisulfite Sequencing Data Mapping☆12Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ☆45Updated 2 years ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆41Updated 4 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago
- QDNAseq package for Bioconductor☆50Updated last year
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- ☆25Updated last year
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- ☆13Updated 7 years ago
- A software for calculating telomere length☆70Updated 6 years ago
- DCC/DAC methylation pipeline source☆56Updated 5 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 3 months ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- ☆30Updated last year
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated last year
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆49Updated last week