gusevlab / stratASLinks
🌓 Allele specific analyses across cell states and conditions
☆10Updated 2 years ago
Alternatives and similar repositories for stratAS
Users that are interested in stratAS are comparing it to the libraries listed below
Sorting:
- This is a pipeline for calculating weights for TWAS☆32Updated 3 years ago
- Create Regional Association Plots☆12Updated last month
- ☆15Updated 4 years ago
- GWAS genetics Fine-mapping method☆26Updated last year
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 3 years ago
- Tissue-Gene Fine-Mapping☆25Updated 7 months ago
- ☆23Updated 3 months ago
- Integration of TWAS and Colocalization Analysis☆17Updated last year
- Estimate genetic correlation using predicted expression☆23Updated 7 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 3 months ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆20Updated 2 weeks ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Updated last year
- An R package for creating ggplot2 based miami plots.☆18Updated 7 months ago
- Assessing enrichment of complex disease or trait associations among QTLs☆15Updated 5 years ago
- Regional association plots☆25Updated last year
- harmonization, liftover, and imputation of summary statistics from GWAS☆33Updated 5 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated 2 years ago
- ☆16Updated last week
- Workflow for performing cistrome-wide associations studies☆10Updated 3 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆16Updated 4 years ago
- A powerful TWAS framework leveraging summary-level reference data☆31Updated 6 months ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated 2 years ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆17Updated 4 years ago
- S-LDSC scripts for use on MR server.☆10Updated 4 years ago
- GENI plots to visualise results from genome-wide association studies☆30Updated last year
- Colocalization analysis of genetic association signals☆53Updated 4 months ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- ☆19Updated 2 months ago
- TWAS-pipeline☆24Updated 4 years ago
- ☆10Updated 5 months ago