☆76Jun 4, 2021Updated 4 years ago
Alternatives and similar repositories for delfi_scripts
Users that are interested in delfi_scripts are comparing it to the libraries listed below
Sorting:
- ☆31Mar 5, 2024Updated 2 years ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆78Jul 22, 2020Updated 5 years ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆76Aug 18, 2022Updated 3 years ago
- A flexible framework for nucleosome profiling of cell-free DNA☆29Jul 27, 2023Updated 2 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆200Mar 20, 2024Updated last year
- Profiling of transcription factor binding sites in cell-free DNA☆27Apr 9, 2020Updated 5 years ago
- R package for CRAG☆12Feb 17, 2025Updated last year
- ☆11Jun 14, 2023Updated 2 years ago
- R package to work with ctDNA sequencing data☆47Feb 20, 2022Updated 4 years ago
- ☆25Jan 18, 2022Updated 4 years ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 2 years ago
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆41Feb 14, 2026Updated 2 weeks ago
- cfDNA analysis workflow☆23Jun 15, 2023Updated 2 years ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆44Jul 28, 2021Updated 4 years ago
- A mosaic detecting software based on phasing and random forest☆70Dec 8, 2025Updated 2 months ago
- ☆26Aug 8, 2024Updated last year
- Scripts for analyses in the Griffin manuscript☆11Dec 14, 2022Updated 3 years ago
- ☆10Nov 18, 2022Updated 3 years ago
- ☆54Mar 9, 2022Updated 3 years ago
- ☆13Jan 18, 2017Updated 9 years ago
- cfDNA cell type of origin estimation☆34Oct 19, 2023Updated 2 years ago
- ☆16Jun 27, 2025Updated 8 months ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆16Apr 2, 2019Updated 6 years ago
- allele specific DNA methylation haplotype region☆13Oct 18, 2023Updated 2 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Mar 27, 2020Updated 5 years ago
- ☆22Jul 2, 2020Updated 5 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆49Nov 20, 2023Updated 2 years ago
- ☆22Feb 5, 2025Updated last year
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Irons out wrinkles in noisy coverage data using robust PCA☆15May 14, 2025Updated 9 months ago
- ☆10Jul 13, 2022Updated 3 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Jul 7, 2018Updated 7 years ago
- Inferring expressed genes by whole-genome sequencing of plasma DNA☆19May 23, 2016Updated 9 years ago
- ☆43Feb 9, 2024Updated 2 years ago
- Collection of fragmentomic analysis scripts☆12Jul 3, 2024Updated last year
- ☆11Jul 13, 2018Updated 7 years ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago