cancer-genomics / delfi_scripts
☆72Updated 3 years ago
Alternatives and similar repositories for delfi_scripts:
Users that are interested in delfi_scripts are comparing it to the libraries listed below
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- ☆116Updated last year
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆63Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆96Updated 3 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆106Updated 7 months ago
- ☆71Updated 10 months ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 3 years ago
- ☆58Updated 9 months ago
- ☆111Updated last year
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆29Updated 2 weeks ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆141Updated last month
- ☆40Updated 2 years ago
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- ATAC-seq snakemake pipeline☆86Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆63Updated 2 weeks ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆124Updated 6 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆73Updated 3 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆93Updated 3 years ago
- ☆57Updated 4 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆46Updated last year
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆50Updated 2 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆92Updated 7 years ago
- R package containing useful functions for mutational signature analysis☆80Updated this week
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated last month
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆38Updated 6 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆108Updated last month