huishenlab / compartmapLinks
Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq
☆14Updated last week
Alternatives and similar repositories for compartmap
Users that are interested in compartmap are comparing it to the libraries listed below
Sorting:
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆51Updated last year
- ☆55Updated 4 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- ☆28Updated 6 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 5 months ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- ☆32Updated 7 months ago
- ☆34Updated 6 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- binned motif enrichment analysis and visualisation☆41Updated last week
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Fast motif matching in R☆46Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆25Updated 10 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated last month
- An R package to time somatic mutations☆62Updated 4 years ago
- Cellsnake tool main repo☆33Updated last year
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Updated 5 years ago
- ☆42Updated 4 years ago