huishenlab / compartmapLinks
Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq
☆14Updated 3 weeks ago
Alternatives and similar repositories for compartmap
Users that are interested in compartmap are comparing it to the libraries listed below
Sorting:
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆34Updated 6 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆56Updated 4 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Updated 5 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆24Updated 9 months ago
- ☆55Updated 4 years ago
- binned motif enrichment analysis and visualisation☆41Updated last month
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- ☆28Updated 6 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- ☆51Updated last year
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆59Updated 11 months ago
- ☆38Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- Cellsnake tool main repo☆33Updated last year
- ☆41Updated 2 months ago
- ☆27Updated 4 years ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- scWGCNA☆61Updated 2 years ago