Alternatives and similar repositories for DNA-methylation-analysis

Users that are interested in DNA-methylation-analysis are comparing it to the libraries listed below

• simonvh / bioinfosummer
  Tutorial for AMSI BioInfoSummer 2018
  ☆29Updated 6 years ago
• sirselim / illumina450k_filtering
  A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
  ☆30Updated last year
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆49Updated 2 months ago
• bvieth / scRNA-seq-pipelines
  Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"
  ☆54Updated 4 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆50Updated last week
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆111Updated 2 weeks ago
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆33Updated 3 years ago
• kundajelab / phantompeakqualtools
  This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…
  ☆59Updated 4 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆66Updated 2 years ago
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆36Updated 7 years ago
• ENCODE-DCC / dna-me-pipeline
  DCC/DAC methylation pipeline source
  ☆55Updated 4 years ago
• AAlhendi1707 / countToFPKM
  Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
  ☆62Updated 4 years ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 4 years ago
• BIMSBbioinfo / genomation
  R package for genomic feature analysis and visualization
  ☆79Updated 2 months ago
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆32Updated last year
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆59Updated 4 years ago
• hbctraining / DGE_workshop_salmon
  ☆72Updated 3 years ago
• broadinstitute / 2019_scWorkshop
  Repo for Physalia course Analysis of Single Cell RNA-Seq data
  ☆32Updated 5 years ago
• crazyhottommy / pyflow-ATACseq
  ATAC-seq snakemake pipeline
  ☆89Updated 5 years ago
• jokergoo / rGREAT
  GREAT Analysis - Functional Enrichment on Genomic Regions
  ☆87Updated 3 months ago
• GoekeLab / proActiv
  Estimation of Promoter Activity from RNA-Seq data
  ☆53Updated 3 years ago
• saketkc / rna-seq-snakemake
  Snakemake based pipeline for RNA-Seq analysis
  ☆31Updated 6 years ago
• jianhong / trackViewer
  A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
  ☆72Updated last week
• pachterlab / kallisto-transcriptome-indices
  Reference transcriptome indices build from kallisto for popular organisms
  ☆42Updated last year
• ivanek / Gviz
  This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.
  ☆85Updated 5 months ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆117Updated 9 months ago
• LiuLabUB / HMMRATAC
  HMMRATAC peak caller for ATAC-seq data
  ☆100Updated 7 months ago
• quinlan-lab / sllobs-biostats
  ☆71Updated 3 years ago
• bioinformatics-core-shared-training / cruk-summer-school-2019
  Summer School 2019 - Functional Genomics
  ☆20Updated 5 years ago
• jlab-code / MethylStar
  A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
  ☆35Updated 3 years ago