gcyuan / diHMMLinks
☆15Updated last year
Alternatives and similar repositories for diHMM
Users that are interested in diHMM are comparing it to the libraries listed below
Sorting:
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Exon-Intron Split Analysis (EISA) in R☆16Updated 3 weeks ago
- A framework to infer mutational signatures in cancer over time☆55Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Updated 6 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- ☆34Updated 6 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated 3 weeks ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 6 months ago
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Marker gene selection from scRNA-seq data☆15Updated 5 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year