gcyuan / diHMMLinks
☆15Updated 2 years ago
Alternatives and similar repositories for diHMM
Users that are interested in diHMM are comparing it to the libraries listed below
Sorting:
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- Big data Regression for predicting DNase I hypersensitivity☆31Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Marker gene selection from scRNA-seq data☆15Updated 5 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- ☆28Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 7 months ago
- scover☆24Updated 2 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago
- Clone identification from single-cell data☆61Updated 3 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Heterogeneity Induced Pre-Processing tOol☆18Updated 4 years ago
- ☆34Updated 6 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- ☆20Updated 6 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- ☆12Updated 6 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last month
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆31Updated 2 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago
- chia pet analysis software☆25Updated 6 years ago