gcyuan / diHMMLinks
☆15Updated 2 years ago
Alternatives and similar repositories for diHMM
Users that are interested in diHMM are comparing it to the libraries listed below
Sorting:
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Big data Regression for predicting DNase I hypersensitivity☆31Updated last year
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Updated 6 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Marker gene selection from scRNA-seq data☆15Updated 5 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 3 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- ☆12Updated 6 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆31Updated 2 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 7 years ago
- A framework to infer mutational signatures in cancer over time☆56Updated 6 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- ☆34Updated 6 years ago
- ☆28Updated 6 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Heterogeneity Induced Pre-Processing tOol☆18Updated 4 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 8 months ago
- Figure depicting the breadth of multimodal scRNA-seq technologies☆16Updated 6 years ago