shenlab-sinai / diffrepsLinks
Differential analysis for ChIP-seq with biological replicates
☆35Updated 3 years ago
Alternatives and similar repositories for diffreps
Users that are interested in diffreps are comparing it to the libraries listed below
Sorting:
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 9 months ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- DNA copy number detection from off-target sequence data☆32Updated 7 years ago
- Cloud-based single-cell copy-number variation analysis tool☆51Updated 2 years ago
- chia pet analysis software☆25Updated 6 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆32Updated 7 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆36Updated 6 years ago
- An R package for predicting HR deficiency from mutation contexts☆29Updated 7 months ago
- GTEx analysis scripts☆20Updated 8 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 8 years ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- ☆19Updated 7 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated last week
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago