A collection of scripts used to recreate files and graphs used in the MMRF CoMMpass analysis.
☆26Nov 23, 2025Updated 11 months ago
Alternatives and similar repositories for MMRF_CoMMpass
Users that are interested in MMRF_CoMMpass are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dirichlet Process Clustering Pre-Processing Pipeline☆10Feb 20, 2026Updated 8 months ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆22Sep 7, 2026Updated last month
- Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes☆12Updated this week
- Repository for Immune Atlas Research Consortium at MMRF for storing research project code☆14Oct 3, 2025Updated last year
- ☆19Sep 22, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after cor…☆32Oct 29, 2025Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated 3 months ago
- Filters for Next Generation Sequencing☆13Oct 31, 2024Updated 2 years ago
- The snakemake workflow for whole-exome sequencing analysis and generating vcf files☆11Dec 17, 2022Updated 3 years ago
- CNV Rapid Aberration Detection And Reporting☆13Mar 2, 2021Updated 5 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 4 years ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆73Sep 29, 2026Updated last month
- ☆81Jul 12, 2023Updated 3 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆27Aug 31, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A GA4GH Draft Beacon implementation☆11Oct 23, 2015Updated 11 years ago
- ☆14Mar 20, 2021Updated 5 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- mSINGS: Detecting Microsatellite Instability By Next-Generation Sequencing This project provides a program with a command-line interfa…☆11Jun 6, 2023Updated 3 years ago
- DEGAS is an R package that can be used to prioritize cells in relation to disease.☆14Nov 6, 2024Updated last year
- Target exome sequencing analysis for NYU NGS580 gene panel☆10Sep 29, 2021Updated 5 years ago
- Pan gGnome Viewer☆10Sep 24, 2026Updated last month
- Inferring admixture proportions from NGS data☆13Oct 15, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Jul 2, 2026Updated 4 months ago
- Fast, self-contained VCF to MAF converter with embedded annotation (Rust rewrite of vcf2maf)☆26Oct 12, 2026Updated 3 weeks ago
- HiC for copy Number variation and Translocation detection☆41Aug 4, 2021Updated 5 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆21Jan 17, 2020Updated 6 years ago
- SV clustering☆32Jul 5, 2021Updated 5 years ago
- cfSNV: An R tool of sensitively detecting tumor mutations from cell-free DNA in blood☆15Apr 29, 2023Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆20Aug 3, 2026Updated 3 months ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆15Apr 9, 2022Updated 4 years ago
- Segmented HAPlotype Estimation and Imputation Tool☆21Aug 7, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- The ChIP-Seq peak calling algorithm using convolution neural networks☆15Jan 18, 2021Updated 5 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆49Mar 26, 2025Updated last year
- API-first variant triage pipeline combining genomic filtering, annotation, and LLM-driven interpretation for clinical genomics workflows☆21Apr 28, 2026Updated 6 months ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆15Aug 26, 2026Updated 2 months ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆101Mar 6, 2026Updated 7 months ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 3 years ago
- Easy Copy Number !☆22Aug 27, 2025Updated last year