markrobinsonuzh / diff_splice_paperLinks
Code for differential splicing comparison paper (Soneson, Matthes, et al.)
☆20Updated 9 years ago
Alternatives and similar repositories for diff_splice_paper
Users that are interested in diff_splice_paper are comparing it to the libraries listed below
Sorting:
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated 3 months ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆11Updated 5 years ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Flexible Bayesian inference of mutational signatures☆35Updated 2 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- Single-cell Bisulfite Sequencing Data Mapping☆12Updated 4 years ago
- R package for Methylation-based Inference of Regulatory Activity☆13Updated 5 years ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 6 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Filter and prioritize fusion calls☆20Updated 9 months ago
- highly-efficient & lightweight mutation signature matrix aggregation☆18Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆22Updated last year
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- HOT regions paper☆11Updated 6 years ago
- ☆33Updated 3 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- ☆12Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- DriverPower☆26Updated 5 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 4 years ago
- Genomic Association Tester☆31Updated 2 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated 2 years ago