mtw / Bio-ViennaNGSLinks
A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis
☆23Updated 2 months ago
Alternatives and similar repositories for Bio-ViennaNGS
Users that are interested in Bio-ViennaNGS are comparing it to the libraries listed below
Sorting:
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- a string to graph aligner☆41Updated 9 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- sort genomic data☆36Updated last month
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated last year
- full taxonomer cython repository☆22Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- ☆29Updated 4 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago