mtw / Bio-ViennaNGS
A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis
☆23Updated 6 years ago
Alternatives and similar repositories for Bio-ViennaNGS:
Users that are interested in Bio-ViennaNGS are comparing it to the libraries listed below
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 7 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆17Updated 7 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year
- Personal diploid genome creation and coordinate conversion☆24Updated 2 weeks ago