rcavalcante / annotatr
Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=annotatr.
☆26Updated 7 months ago
Alternatives and similar repositories for annotatr:
Users that are interested in annotatr are comparing it to the libraries listed below
- chia pet analysis software☆25Updated 6 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- ☆16Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- ☆21Updated last month
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆21Updated 3 months ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- ☆13Updated 7 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 weeks ago
- R package with motifs for use with chromVAR☆27Updated 7 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated 2 weeks ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- ATAC-seq processing pipeline☆32Updated 3 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated last month
- snakemake workflow for post-processing scATACseq data☆20Updated 4 years ago
- Genomic Association Tester☆31Updated last year
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆32Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 4 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated 3 weeks ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Bead-based single-cell atac processing☆32Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated last month