rcavalcante / annotatrLinks
Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=annotatr.
☆27Updated 3 months ago
Alternatives and similar repositories for annotatr
Users that are interested in annotatr are comparing it to the libraries listed below
Sorting:
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- ☆17Updated 7 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- binned motif enrichment analysis and visualisation☆44Updated 2 months ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆34Updated 4 months ago
- ☆41Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- ☆39Updated 4 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆95Updated last month
- Tutorials covering various topics in genomic data analysis.☆16Updated 7 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated this week
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆38Updated 3 years ago
- ☆13Updated 8 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- chia pet analysis software☆25Updated 7 years ago