nloyfer / meth_atlasLinks
☆50Updated 3 years ago
Alternatives and similar repositories for meth_atlas
Users that are interested in meth_atlas are comparing it to the libraries listed below
Sorting:
- ☆46Updated 2 years ago
- ☆31Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆112Updated 4 years ago
- ☆78Updated 5 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- ☆72Updated 2 years ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆41Updated 4 years ago
- BISulfite-seq CUI Toolkit☆66Updated 8 months ago
- cfDNA cell type of origin estimation☆32Updated last year
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- ☆39Updated 5 years ago
- ☆74Updated 4 years ago
- Allele-specific alignment sorting☆59Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated 3 weeks ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆42Updated 10 months ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- ☆21Updated this week
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆48Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- Battenberg R package for subclonal copynumber estimation☆91Updated 3 months ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆71Updated last week
- Find and characterise transposable element insertions☆21Updated 2 years ago
- IDR☆30Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Burden testing against public controls☆50Updated last year
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago