nloyfer / meth_atlasLinks
☆53Updated 3 years ago
Alternatives and similar repositories for meth_atlas
Users that are interested in meth_atlas are comparing it to the libraries listed below
Sorting:
- ☆49Updated 3 years ago
- ☆31Updated last year
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆43Updated 4 years ago
- ☆82Updated 8 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- ☆72Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated 2 weeks ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆113Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- ☆38Updated 5 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- Genome-wide contact analysis using sklearn☆72Updated last year
- Burden testing against public controls☆50Updated last year
- Allele-specific alignment sorting☆61Updated 3 years ago
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- IDR☆31Updated 2 years ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Updated 3 years ago
- Tutorial Website☆61Updated 4 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Updated 4 months ago
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Updated last year
- ☆21Updated last month
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated 2 months ago
- ☆60Updated 5 months ago
- Extract 3D contacts (.pairs) from sequencing alignments☆123Updated 2 months ago