nloyfer / meth_atlasLinks
☆48Updated 3 years ago
Alternatives and similar repositories for meth_atlas
Users that are interested in meth_atlas are comparing it to the libraries listed below
Sorting:
- ☆43Updated 2 years ago
- ☆38Updated 5 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 3 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- ☆28Updated last year
- ☆34Updated 5 years ago
- An R package to time somatic mutations☆61Updated 4 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- cfDNA cell type of origin estimation☆31Updated last year
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆40Updated 6 months ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated last year
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- An analysis toolkit for single-cell methylation sequencing data☆20Updated this week
- A self-contained repository of all code needed for SPRITE analysis☆21Updated 3 years ago
- QDNAseq package for Bioconductor☆50Updated 10 months ago
- ☆73Updated last month
- A preprocessing and QC pipeline for HiChIP data☆38Updated 2 years ago
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆39Updated 6 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 2 weeks ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 4 months ago
- Tutorial Website☆59Updated 4 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆66Updated 3 weeks ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 3 months ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆46Updated last year
- A flexible framework for nucleosome profiling of cell-free DNA☆27Updated last year