taoshengxu / CancerSubtypes
☆14Updated last year
Related projects ⓘ
Alternatives and complementary repositories for CancerSubtypes
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆30Updated 3 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- Computational identification of targets for CAR-T cell therapy in AML☆15Updated last year
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Updated 5 years ago
- bioinformatics R test code☆13Updated 2 years ago
- Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)☆10Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆15Updated 2 years ago
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- Identify Intra-, Inter-donor variations in bulk or single cell longitudinal dataset☆17Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆10Updated last year
- ☆15Updated 3 years ago
- R package☆21Updated 11 months ago
- ☆9Updated 7 years ago
- Dichotomous of innate immune landscape☆17Updated 5 years ago
- Cell type enrichment analysis using gene signatures and cluster markers☆9Updated 6 years ago
- ☆23Updated last year
- Software and analysis of metabolism studies across multiple cancer types☆9Updated 7 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆12Updated 3 years ago
- Pseudotime Analysis for Bulk Data☆13Updated 3 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- single cell Gene co-Expression Network Analysis☆9Updated 2 years ago
- ☆11Updated 5 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆27Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- ☆29Updated 6 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago