taoshengxu / CancerSubtypesLinks
☆16Updated 2 years ago
Alternatives and similar repositories for CancerSubtypes
Users that are interested in CancerSubtypes are comparing it to the libraries listed below
Sorting:
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)☆10Updated 5 years ago
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago
- Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage☆13Updated 4 years ago
- ☆16Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 3 months ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Dichotomous of innate immune landscape☆17Updated 5 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆11Updated 8 months ago
- ☆23Updated 3 years ago
- Code to reproduce TNBC analysis and figures☆24Updated 3 years ago
- R package☆22Updated last year
- ☆28Updated last year
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- ☆10Updated 2 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Software and analysis of metabolism studies across multiple cancer types☆9Updated 7 years ago
- ☆10Updated 2 months ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- CircRNA testing and ploting R package☆10Updated 4 years ago
- ☆22Updated last year
- Tools for assessing clustering robustness☆25Updated last week
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- ☆10Updated 6 months ago