Scripts for analysis used during the course
☆94Apr 30, 2024Updated last year
Alternatives and similar repositories for scripts
Users that are interested in scripts are comparing it to the libraries listed below
Sorting:
- A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files☆21Mar 20, 2023Updated 2 years ago
- Presentations from the course☆39Aug 28, 2023Updated 2 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated last month
- Repository for speciation genomics website☆27Aug 30, 2025Updated 5 months ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 6 years ago
- General tools for genomic analyses.☆386Feb 28, 2025Updated 11 months ago
- Code to compute the XP-CLR statistic to infer natural selection☆102Jun 13, 2022Updated 3 years ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆38May 21, 2024Updated last year
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆184Dec 19, 2024Updated last year
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆63Sep 19, 2025Updated 5 months ago
- Topology weighting from unphased genotypes of any ploidy☆22Dec 16, 2025Updated 2 months ago
- Scripts to handle NGS data and other biological data☆22Jan 24, 2024Updated 2 years ago
- Sorting Intolerant From Tolerant For Genomes☆31Nov 3, 2017Updated 8 years ago
- Tutorials on evolutionary genomics☆46Mar 11, 2022Updated 3 years ago
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- ☆16Jan 6, 2022Updated 4 years ago
- ☆31Jun 15, 2023Updated 2 years ago
- Scripts and resources for the haploblocks manuscript☆18Mar 20, 2020Updated 5 years ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆168Aug 8, 2024Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆42Mar 7, 2024Updated last year
- ☆15Mar 20, 2023Updated 2 years ago
- Haplotype based scans for selection☆140Updated this week
- An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.☆151Dec 22, 2025Updated 2 months ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆155Oct 27, 2025Updated 4 months ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Oct 2, 2019Updated 6 years ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Nov 24, 2020Updated 5 years ago
- Program for analysing NGS data.☆254Mar 6, 2025Updated 11 months ago
- Codes for the lettuce resequencing project in 2020☆30Jun 28, 2021Updated 4 years ago
- Programs for performing various population genetic analyses☆11Dec 2, 2024Updated last year
- ☆12Jun 12, 2023Updated 2 years ago
- Useful bioinformatic scripts☆60Nov 26, 2024Updated last year
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- Full GATK SNP calling pipeline☆24Oct 30, 2025Updated 3 months ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Oct 12, 2024Updated last year
- Random scripts, mostly for dealing with RADseq data and DNA sequence alignments☆18Oct 2, 2025Updated 4 months ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆43Jul 27, 2023Updated 2 years ago