Alternatives and similar repositories for scripts

Users that are interested in scripts are comparing it to the libraries listed below

• hardingnj / xpclr
  Code to compute the XP-CLR statistic to infer natural selection
  ☆101Updated 3 years ago
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆67Updated last year
• popgenmethods / smcpp
  SMC++ infers population history from whole-genome sequence data.
  ☆170Updated last year
• BGI-shenzhen / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆108Updated last month
• millanek / Dsuite
  Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
  ☆183Updated last year
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆85Updated 4 years ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆76Updated 2 years ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆138Updated 3 months ago
• hewm2008 / VCF2PCACluster
  A new simple and efficient software to PCA and Cluster For popolation VCF File
  ☆81Updated 6 months ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆43Updated 6 years ago
• millanek / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆49Updated 8 months ago
• nt246 / lcwgs-guide-tutorial
  ☆98Updated 4 years ago
• speciationgenomics / presentations
  Presentations from the course
  ☆38Updated 2 years ago
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆82Updated last year
• BGI-shenzhen / VCF2Dis
  VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…
  ☆102Updated 4 months ago
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆116Updated 5 months ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆46Updated 3 years ago
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆130Updated 6 months ago
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆28Updated 3 months ago
• isaacovercast / easySFS
  Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …
  ☆165Updated last year
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆52Updated last year
• ksamuk / pixy
  Software for painlessly estimating average nucleotide diversity within and between populations
  ☆148Updated 2 months ago
• ColonnaLab / EMBO_popgen
  ☆17Updated 6 months ago
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆53Updated 5 years ago
• chenlianfu / geta
  ☆85Updated last year
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆124Updated last year
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆133Updated last year
• szpiech / selscan
  Haplotype based scans for selection
  ☆137Updated this week
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆101Updated last month